Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq20 383 4e-101 >seq20 Length=105358 Score = 383 bits (424), Expect = 4e-101 Identities = 1167/1776 (66%), Gaps = 32/1776 (2%) Strand=Plus/Minus Query 363400 AAGACGATGGAGAAATCCTACCTATCTC-GTATCAATGGTGATATTGTTGAACGCCCGCA 363458 |||||| | ||| || ||||| |||| | ||||| || | ||| || ||||| || Sbjct 13443 AAGACGCTCGAGCGCTCATACCT-TCTCCGCATCAACGGCAAGGTTGCCGAGCGCCCACA 13385 Query 363459 GCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCGATTGA 363518 || ||||| ||||| || ||| | || |||||| | | | | || |||||||| Sbjct 13384 ACACATGTTGATGCGCGTGGCTGTCGGCATCCATGGAGAGAACATCGAGAAGGCGATTGA 13325 Query 363519 AACATATAAGCTTCTAAGT-GCTCGTGTA-TTCACGCACGCCACGCCAACAATGTACAAT 363576 || || | || | | || || ||| ||||| ||||| |||| || | | |||| Sbjct 13324 GACTTACGA-CTAC-ATGTCGCAAAAGTACTTCACACACGCTTCGCCTACCCTCTTCAAT 13267 Query 363577 GCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCC 363636 || || || | ||||| || ||||| || ||||| || | | |||||||| || | Sbjct 13266 GCGGGCACACCAAATCCTCAAATGTCGTCCTGCTTCCTCATCGACATGAAGGAGGACAGC 13207 Query 363637 ATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGA 363696 || || || |||| |||||||| |||| |||||| | || ||||||| || ||||| Sbjct 13206 ATTGATGGCATCTACGACACACTCAAGACTTGTGCCTTGATCTCCAAGACCGCTGGCGGT 13147 Query 363697 ATTGGTGT-ATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGCGGCACAGGGG 363754 |||||| | | || || || | | ||||| || | | |||||| | ||||| | Sbjct 13146 ATTGGTCTCAACGTTC-ACCGTATCCGTGCCACTGG-CTCTTACATCGGTGGCACCAATG 13089 Query 363755 GATAC-TCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTC 363813 | ||| ||||| || || |||||||||||||||| | |||| || || | || || Sbjct 13088 G-TACATCGAACGGTCTCATTCCCATGCTTCGTGTCTACAACAACACGGCTCGTTATGTT 13030 Query 363814 GACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCC 363873 || || ||||| |||||| || || || || || || || ||||| ||||| Sbjct 13029 GATCAAGGTGGCAACAAGCGCCCTGGCGCCTTCGCCATCTACCTGGAGCCATGGCATGCT 12970 Query 363874 GATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGT 363933 ||| | || | || ||||| || || || ||| || ||||||||| | ||||| ||| Sbjct 12969 GATGTCTTCGGTTTCCTTGATCTTCGCAAGAACCATGGCAAAGAGGAAGTTCGTGCCCGT 12910 Query 363934 GATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGT---GGAGGCAGGT 363990 || || ||||| ||||| ||| || | |||| ||| ||||||||||| |||| ||| Sbjct 12909 GACCTCTTCTACGCACTATGGATTCCAGACCTTTTCATGAAGCGCGTTCAGGAGAATGGT 12850 Query 363991 AAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGAC 364050 || ||| | || || ||||| ||||| || |||||| |||| || | ||||| Sbjct 12849 GAG---TGGACGCTATTCTGCCCCAACGAAGCCCCTGGTCTTGCCGACGTGTATGGTGAT 12793 Query 364051 GACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCC 364110 || | | | || ||| | || ||| || | ||| |||| ||| | Sbjct 12792 GAGTTCGAGGAGCTCTACCATCGTTACGAACGTGACAACCGTGGTCGGGAGACTGTTCGC 12733 Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTAT-AT 364169 || || ||||| |||| ||||||| | || | |||| ||||| || | ||||| | || Sbjct 12732 GCCCAAAAGCTCTGGTATGCCATCCTTGAGGCTCAGACGGAGACTGGTA-ACCCTTTCAT 12674 Query 364170 GTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCA 364229 | | ||||||||| | |||||||| ||| |||||| || | |||||||| |||| ||| Sbjct 12673 GCTCTACAAAGATGCTTGCAACCGGAAGAGCAACCAAAAGAATCTTGGTACCATTC-GCA 12615 Query 364230 GAGC-AACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTA 364288 | | ||||| || |||||||| | || ||||| ||||| || ||| || ||||||| Sbjct 12614 GCTCTAACCTCTGCACCGAGATCGTCGAGTACACTGCTCCTGATGAGGTAGCGGTATGTA 12555 Query 364289 ACCTTGCGTCGATCGCGCTTCCGGCGTTTG-----TAAAAG-ATGGTACTTTTGACCACC 364342 |||| || ||| ||||||| || |||| | || ||| || |||||| | Sbjct 12554 ACCTCGCCTCGCTCGCGCTCCCCTCGTTCGTGGACTATAAGCGCGGGGAGTTTGACTTCA 12495 Query 364343 AGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGA 364402 | | || | || || ||| | || ||| |||| | ||||| | ||||| | Sbjct 12494 ACAAACTCCACGAAGTCACCCAAGTTGTTACCCGCAACTTGAACAAGATCATCGAAGTCA 12435 Query 364403 ATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTG 364462 | | || ||| | ||||| || ||| | ||||| | || || || || | Sbjct 12434 ACCACTACCCAGTAGAGGAAGCACGTCGCAGCAATTTCCGTCACAGACCTATCGGGCTCG 12375 Query 364463 GTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATTCGCCTGACG 364522 |||| ||||| |||||||| | || || || || | || || ||||| || | Sbjct 12374 GTGTTCAGGGTCTCGCTGATGCCTTCCTGGCACTACGCTTGCCCTTCGAGTCGCCCGAGG 12315 Query 364523 CTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGT 364582 | || || | ||||||| || || || || || || | || | || | Sbjct 12314 CCAAGAAGCTCAACATCCAGATCTTCGAGACCATCTACCACGCGGCCCTCACCTCATCTT 12255 Query 364583 GTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGG 364642 | || | || || ||| ||| | || || || || || ||| | || || | Sbjct 12254 GCGACATTGCTAAGGAGCTGGGCCCTTACGCGACATACGAAGGTTCTCCTATCTCCCAAG 12195 Query 364643 GAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGGGATACGC 364702 | | | |||| || || ||||| ||||| || ||| | ||| | |||| ||| Sbjct 12194 GCCAGCTTCAGTACGACCTGTGGAACGTCACACCCACTGATCTCTGGGATTGGGCCTCGC 12135 Query 364703 TACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCA 364762 | ||| | |||| || |||||| || || | || |||||||| | Sbjct 12134 TGAAGGACAAGATCGCACAGCACGGCGTTCGCAATTCTCTTTTGGTTGCACCCATGCCGA 12075 Query 364763 CGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAG-CAAT 364821 | || ||||| | ||||| || || || |||||||||||||| || |||| | ||| Sbjct 12074 CCGCATCTACGTCTCAGATTCTTGGGAATAACGAGTGCTTCGAGCC--CTACACGTCAAA 12017 Query 364822 C-TTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAA 364880 | | || || ||||| || || |||| || |||| || || || | || | || Sbjct 12016 CATCTACTCTCGCCGTGTGCTGGCCGGCGAGTTTCAAGTCGTCAACCCCTGGCTCTTGAA 11957 Query 364881 GGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAA 364940 ||||| ||| || |||||| ||| | |||||||||| ||||||||||| | Sbjct 11956 AGATCTCGTTGACATGGGACTGTGGTCTGAGAACATGAAGAACCGTATCATCGCCGATGG 11897 Query 364941 TGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGT 365000 ||||| | |||| ||||| | || ||||| |||| || | ||||| || || Sbjct 11896 CGGTTCCATTCAGAGGATTCCCAACATCCCTGAAGAGACGAAGACTCTGTACAAGACAGT 11837 Query 365001 ATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTG 365060 ||||| || || ||| || |||| | ||||| ||||| || ||||| || ||| Sbjct 11836 GTGGGAGATCTCGCAGCGCACCATCATCCAGATGGCTGCCGACCGTGGTGCGTTCATCGA 11777 Query 365061 TCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCAT 365120 ||| ||||| || ||| | ||||| |||| ||| | |||| | || || || Sbjct 11776 CCAGTCTCAGTCCTTGAACATTCACATGAAGGAGCCGACCATGGGCAAGATCACTTCGAT 11717 Query 365121 GCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 |||||| ||| ||||| || || ||||| || Sbjct 11716 GCATTTTGCCGGCTGGAAGCTTGGGCTGAAGACTGG 11681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303343981250432