Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq230 150 2e-31 seq20 149 6e-31 seq241 113 4e-20 seq254 109 5e-19 seq275 107 2e-18 >seq230 Length=87271 Score = 150 bits (166), Expect = 2e-31 Identities = 348/514 (68%), Gaps = 13/514 (3%) Strand=Plus/Plus Query 46087 CCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAG-CAGCACCGCGAC 46145 || ||| | |||||||| | |||||||| | || |||||| ||| || | | |||| Sbjct 45263 CCATGCATTCGCAAGAAGGCTGACTGGGCCCTCAAATGGATCT-CAGACAAGAACTCGAC 45321 Query 46146 TTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTT 46205 |||||| | ||| |||| || || || || |||||| |||| || ||| || Sbjct 45322 CTTCGCCAACCGTCTGGTCGCATTCGCCGCCGTTGAGGGCATCTTCTTCAGCGGCTCGTT 45381 Query 46206 TGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGA 46265 || ||||||| | | || | ||| | |||||||| || || || ||||| Sbjct 45382 CGCGTCCATCTTCTGGTTGAAGAAGCGTGGCCTGATGCCCGGTCTCACATTCTCAAACGA 45441 Query 46266 GCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCG 46325 |||||| || |||||||||||| |||| || |||||||| || ||| || | ||| Sbjct 45442 GCTGATCTCTCGCGACGAGGGCATGCACACTGACTTTGCCTGCCTCCTCT---TCTCTCT 45498 Query 46326 CGTGCACGACAAGCTTGCG-CCCGACACCGTGCTGAGCATGTTCAAGGAGGCGGTGGCCA 46384 | | || ||| || | || |||| | | ||| ||| ||||| || || | Sbjct 45499 CCT-CAACACACGCCCCAGTAAGGATGCCGTCCAGGCCATCATCACTGAGGCCGTCGCGA 45557 Query 46385 TTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGC-ACAG 46443 | ||||||||||| | || | || || ||| || ||||| ||||||||| | || Sbjct 45558 TCGAGAAGGAGTTCCTCACAGATGCTCTCCCCTGCGCTCTGCTTGGCATGAACTCTGCAC 45617 Query 46444 TCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTT--CACCAGC 46501 || |||||| | ||||| |||||||| || || || || || || ||| | || | Sbjct 45618 TC-ATGTGCCAGTACATTGAGTTTGTGGCTGATCGCCTTCTGCTGTCCCTTGGTAACAAC 45676 Query 46502 CGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCA 46561 ||| | | |||| ||| || || || || ||| | |||||||| |||| ||||| Sbjct 45677 --AAGTACTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTGGCGGGCA 45734 Query 46562 AAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 | || || || || || ||||||||||| || || Sbjct 45735 AGACCAACTTCTTTGAGAAGCGCGTCGGTGACTA 45768 >seq20 Length=105358 Score = 149 bits (164), Expect = 6e-31 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 |||||||| |||||||||||||||| |||||| || | || | ||| |||||| |||| Sbjct 11972 TTGACGACTTGAAACTCGCCGGCCAGCACACGGCGAGAGTAGATGTTTGACGTGTAGGGC 12031 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || |||||||||| || || || |||| || | |||||| |||||| || ||| Sbjct 12032 TCGAAGCACTCGTTATTCCCAAGAATCTGAGACGTAGATGCGGTCGGCATGGGTGCAACC 12091 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 || | |||||||| | |||||||| ||| | ||||| |||| |||||||||| Sbjct 12092 AAAAGAGAATTGCGAACGCCGTGCTGTGCGATCTTGTCCTTCAGCGAGGCCCAATCCCAG 12151 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTG 145272 || ||| || | |||| ||||| ||||||||| Sbjct 12152 AGATCAGTGGGTGTGACGTTCCACAGGTCGTACTG 12186 >seq241 Length=242151 Score = 113 bits (124), Expect = 4e-20 Identities = 151/209 (72%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 131003 ATGA-GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAA 131061 |||| |||||| || | ||| || || || || | || |||||||| || |||||||| Sbjct 46869 ATGATGCCACCACGGAGACGGAGGACCAAGTGGAGCGTTGACTCCTTCTGGATGTTGTAG 46810 Query 131062 TCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCC 131121 ||| || ||||| |||||| ||||||||||| ||| |||| || |||||||||||| Sbjct 46809 TCGGACAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCC 46750 Query 131122 GGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGAC 131181 || || || || || ||||| ||| || ||||| | || | || |||| ||| Sbjct 46749 GGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGAC 46690 Query 131182 TCGATGTCGACGGTAACGGTTTTACCGGT 131210 || | |||| ||| | || || ||||| Sbjct 46689 TCCACCTCGAGGGTGATCGTCTTGCCGGT 46661 >seq254 Length=118772 Score = 109 bits (120), Expect = 5e-19 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 ||||| || | ||||| || || |||||||| |||||||||||| | ||| || Sbjct 32794 CGCAGGACGAGATGTAGAGTGGATTCCTTTTGGATGTTGTAATCGGAGAGGGTACGGCCA 32853 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||| ||||||||||| ||| | || || |||||||||||||||||||| || || || Sbjct 32854 TCCTCGAGCTGCTTGCCGGCGAAAATCAAGCGCTGCTGGTCCGGAGGGATGCCCTCCTTA 32913 Query 131140 TCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 || ||| | | || ||||| | || | ||||||| ||||| | || | ||| | Sbjct 32914 TC-CTGAATCTTTGACTTGACGTTGTCGATCGTATCGGATGACTCAACCTCAAGGGTGAT 32972 Query 131199 GGTTTTACCGGT 131210 ||| || ||||| Sbjct 32973 GGTCTTGCCGGT 32984 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || ||||| || || | ||||||||||| ||||| ||||| ||||| Sbjct 32326 CCACCACGCAGGCGGAGCACCAAGTGCAGTGTCGACTCCTTCTGAATATTGTAGTCGCTG 32385 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||| || | |||||| || ||| |||| | |||||||||||| || ||| Sbjct 32386 AGCGTTCGGCCGTCTTCCAACTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGCGGG 32445 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| ||| || | | || | |||||| | || |||| Sbjct 32446 ATACCCTCCTTGTCTTGGATCTTCGATTTCACGTTGTCGATGGTATCGCTCGATTCGACT 32505 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || || || ||||| || || || || ||||| Sbjct 32506 TCCAATGTGATAGTCTTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 32552 Score = 102 bits (112), Expect = 8e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | || || || | ||| | || |||||||| || |||||||| ||| Sbjct 33064 GCCTCCACGAAGGCGGAGGACGAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGGA 33123 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| ||||| ||||||||||| ||| |||| | ||||||||||||||||| Sbjct 33124 GAGGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGAGG 33183 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 33184 GATACCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATGGTGTCGGACGACTCCAC 33243 Query 131187 GTCGACGGTAACGGTTTTACCGGT 131210 || | ||| | ||| || ||||| Sbjct 33244 CTCAAGGGTGATGGTCTTGCCGGT 33267 >seq275 Length=365033 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| ||| || || || || | |||||||||||| || |||||||| ||| Sbjct 273864 CCTCCACGCAGACGGAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 273805 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| ||| |||| | ||||||||||||||| || Sbjct 273804 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGA 273745 Query 131128 ATTCCTTCTTTGTC 131141 || || || ||||| Sbjct 273744 ATGCCCTCCTTGTC 273731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472009401507840