Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq526 140 2e-28 seq303 109 4e-19 >seq526 Length=1226 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 949 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1008 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1009 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1043 >seq303 Length=251182 Score = 109 bits (120), Expect = 4e-19 Identities = 207/303 (68%), Gaps = 4/303 (1%) Strand=Plus/Plus Query 6187 ATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTA 6246 |||| || ||| | |||||||||||||| ||| |||| || ||||| | ||||| | Sbjct 207157 ATGTCGCCGACTCCTTCTACCGCTACAAGATGGAGCGCCTCCAGTCCAAGATTGAGGGCA 207216 Query 6247 AGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAA--GTCGCTAAGGCGCTCGG 6304 | || ||||| || || ||||||||||||||| | | | | || || || | |||| Sbjct 207217 AAGGCAACGGCATCAAGACCGTCATTGTCAACCT--CAGCAGCGTGGCCCAGTCACTCGC 207274 Query 6305 ACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTT 6364 ||||| | | || | || || ||||| | ||| || || || ||||| | Sbjct 207275 TCGCCCCCCTGCTCACGTCATCAAGTACTTCGGCTTCGAGCTCGGGGCCCAGACCAACAC 207334 Query 6365 TGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGA 6424 ||| ||| |||| |||| ||| | ||||| | || || | |||||| ||||| Sbjct 207335 CAATCCCAATGACGACCGCTGGATCATCAACGGCGCCCACGACGCCAGCAAGCTCCAGGA 207394 Query 6425 CTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGAC 6484 || || |||||||| || |||||| || || || | | ||| | ||||| ||||| Sbjct 207395 CTATCTCGACGGCTTCATCTCCAAGTTCGTTCTCTGCAAGAAGTGCAAGAACCCCGAGAC 207454 Query 6485 CGA 6487 ||| Sbjct 207455 CGA 207457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334944848670656