Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq20 188 9e-43 >seq20 Length=105358 Score = 188 bits (208), Expect = 9e-43 Identities = 557/856 (65%), Gaps = 22/856 (3%) Strand=Plus/Plus Query 62753 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 62812 || || || ||||| || |||||||||| || | | | || | | ||||| ||||| Sbjct 12545 GAGGCGAGGTTACATACCGCTACCTCATCAGGAGCAGTGTACTCGACGATCTCGGTGCAG 12604 Query 62813 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 62872 || ||| | ||||| || | ||| | ||| || ||||| ||| || ||||| Sbjct 12605 AGGTTAGAGCTGCGAATGGTACCAAGATTCTTTTGGTTGCTCTTCCGGTTGCAAGCATCT 12664 Query 62873 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 62932 || || || ||||| || ||||||| || |||||| || | || || | ||||| Sbjct 12665 TTGTAGAGCATGAAAGGGTTACCAGTCTCCGTCTGAGCCTCAAGGATGGCATACCAGA-- 12722 Query 62933 ACTCGAGCCTTTATTATAGATTTGTATCTC--------TTTTCTCTTTCGTATAGTGTAT 62984 || ||| || || || | || || | |||||| | | Sbjct 12723 ------GCTTTTGGGCGCGAACAGTCTCCCGACCACGGTTGTCACGTTCGTAACGATGGT 12776 Query 62985 ACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACA 63044 | | |||||||| || || | || | | | || ||||| ||| | || || | Sbjct 12777 AGAGCTCCTCGAACTCATCACCATACACGTCGGCAAGACCAGGGGCTTCGTTGGGGCAGA 12836 Query 63045 TCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 63104 | || |||||| || | |||| || || ||||| || || || |||||||| || | Sbjct 12837 ATAGCGTCCACTCACCATTCTCCTGAACGCGCTTCATGAAAAGGTCTGGAATCCATAGTG 12896 Query 63105 CTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 63164 | || || || | || | | |||||| || || ||||| |||||| |||| Sbjct 12897 CGTAGAAGAGGTCACGGGCACGAACTTCCTCTTTGCCATGGTTCTTGCGAAGATCAAGGA 12956 Query 63165 ACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGT 63224 | | | | ||||| |||||| || |||| ||| ||||| | | ||||| || |||| Sbjct 12957 AACCGAAGACATCAGCATGCCATGGCTCCAGGTAGATGGCGAAGGCGCCAGGGCGCTTGT 13016 Query 63225 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 63284 | || || ||||| | || | ||| ||||| || || || | | ||| ||||| | || Sbjct 13017 TGCCACCTTGATCAACATAACGAGCCGTGTTGTTGTAGACACGAAGCATGGGAATGAGAC 13076 Query 63285 CATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAA--T 63342 | || |||||||||||||| || ||| || ||| ||||||| ||| || | Sbjct 13077 CGTTCGATGTACCATTGGTGCCACCGATGTAAGAGCCAGTGGCACGGATACGGTGAACGT 13136 Query 63343 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATA 63402 || ||||| || || || || | || ||||| || || || || | || || || Sbjct 13137 TG--AGACCAATACCGCCAGCGGTCTTGGAGATCAAGGCACAAGTCTTGAGTGTGTCGTA 13194 Query 63403 GATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 63462 |||||| || || || || ||| |||||| | || || ||| |||||||| || Sbjct 13195 GATGCCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGACGACATTTGAGGATT 13254 Query 63463 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGA-AAGTA 63521 || |||||||| || | |||||| |||||||| || || | |||| || | ||| Sbjct 13255 TGGTGTGCCCGCATTGAAGAGGGTAGGCGAAGCGTGTGTGAAGTACTTTTGCGACATGTA 13314 Query 63522 GATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCA 63581 | | ||| |||||||| || || || | | | ||| || || || || || |||| Sbjct 13315 G-TCGTAAGTCTCAATCGCCTTCTCGATGTTCTCTCCATGGATGCCGACAGCCACGCGCA 13373 Query 63582 TTAACATGTGCTGAGG 63597 | |||||||| || || Sbjct 13374 TCAACATGTGTTGTGG 13389 Score = 122 bits (134), Expect = 1e-22 Identities = 344/525 (66%), Gaps = 5/525 (1%) Strand=Plus/Plus Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909 ||||||||||||||||| || || | | || || |||||||||||||| || || || Sbjct 11633 GTGAATTGAATGGGAGCCGAAGCAGCCATAGTGCGGAGATAGTACATTCCAGTCTTCAGC 11692 Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969 || || |||| ||| ||||||||| || | ||| |||| || || Sbjct 11693 CCAAGCTTCCAGCCGGCAAAATGCATCGAAGTGATCTTGCCCATGGTCGGCTCCTTCATG 11752 Query 61970 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATA 62029 || || |||| || ||| || |||||||| || || | ||| |||||||| | || Sbjct 11753 TGAATGTTCAAGGACTGAGACTGGTCGATGAACGCACCACGGTCGGCAGCCATCTGGATG 11812 Query 62030 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62089 || || || | || ||||| | || || || | ||| | ||||| || | | Sbjct 11813 ATGGTGCGCTGCGAGATCTCCCACACTGTCTTGTACAGAGTCTTCGTCTCTTCAGGGATG 11872 Query 62090 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62146 || | | |||||||||| || ||||| || || || | ||||| || | ||| | Sbjct 11873 TTGGGAATCCTCTGAATGGAACCGCCATCGGCGATGATACGGTTCTTCATGTTCTCAGAC 11932 Query 62147 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62206 || | | | || | | || | | ||| || || || |||||||| || || Sbjct 11933 CACAGTCCCATGTCAACGAGATCTTTCAAGAGCCAGGGGTTGACGACTTGAAACTCGCCG 11992 Query 62207 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 62266 | || || | |||| ||| || || || || || || | |||| ||||| || Sbjct 11993 GCCAGCACACGGCGAGAGTAGATGTTTGACGTGTAGGGCTCGAAGCACTCGTTATTCCCA 12052 Query 62267 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 62326 | ||| |||| || ||||| |||||||| ||||| ||||| | | ||| | || ||| Sbjct 12053 AGAATCTGAGACGTAGATGCGGTCGGCATGGGTGCAACCAAAAGAGAATTGCGAACGCCG 12112 Query 62327 T-ATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATC 62370 | ||| | ||| || || || || | |||||| ||| ||||| Sbjct 12113 TGCTGTGC-GATCTTGTCCTTCAGCGAGGCCCAATCCCAGAGATC 12156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633627437849600