Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq254 95.1 1e-14 seq241 95.1 1e-14 >seq254 Length=118772 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| |||||| | || || || | |||||| | ||||| || ||| Sbjct 32552 ATGCAAATCTTTGTCAAGACTCTTACTGGCAAGACTATCACATTGGAAGTCGAATCGAGC 32493 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || ||||| |||| || ||| ||||| || || || || |||||||| Sbjct 32492 GATACCATCGACAACGTGAAATCGAAGATCCAAGACAAGGAGGGTATCCCGCCTGACCAG 32433 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || || || || || ||||| | || || | |||| |||||| Sbjct 32432 CAGCGTCTCATCTTCGCTGGTAAGCAGTTGGAAGACGGCCGAACGCTCAGCGACTACAAT 32373 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || || || || || || ||||| Sbjct 32372 ATTCAGAAGGAGTCGACACTGCACTTGGTGCT 32341 Score = 89.7 bits (98), Expect = 4e-13 Identities = 136/192 (71%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 25021 TGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTG--AA 25078 ||||||| || ||||||| | || ||||||||||| ||||| ||||| || || || Sbjct 33269 TGACCGGCAAGACCATCACCCTTGAGGTGGAGTCGTCCGACACCATCGA--CAATGTCAA 33212 Query 25079 GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGG 25138 | || ||| ||||| || || || || || ||||| ||||| | || || ||||| Sbjct 33211 GAGCAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAGCAGCGCCTGATCTTCGCCGG 33152 Query 25139 CAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCT 25198 ||| || | || |||| |||||| | ||| ||||| || || || || || || || Sbjct 33151 CAAGCAGCTTGAGGATGGTCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCTACACT 33092 Query 25199 ACATTTAGTGCT 25210 ||| | || || Sbjct 33091 CCATCTCGTCCT 33080 >seq241 Length=242151 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTG--AAGC 25080 ||||| || | ||||| |||| ||||||||||| ||||| ||||| || || ||| Sbjct 46661 ACCGGCAAGACGATCACCCTCGAGGTGGAGTCGTCCGACACCATCGA--CAATGTCAAGT 46718 Query 25081 AAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCA 25140 || ||| ||||| || || ||||| || ||||| ||||| | || || ||||||| Sbjct 46719 CCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCTTGATCTTCGCCGGCA 46778 Query 25141 AACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTAC 25200 | || | || || | |||||| || ||| ||||| || || || || || ||||| | Sbjct 46779 AGCAGCTCGAGGACGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCAACGCTCC 46838 Query 25201 ATTTAGTGCT 25210 | || || || Sbjct 46839 ACTTGGTCCT 46848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433324958037440