Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq254 125 6e-24 seq275 104 2e-17 seq241 96.9 3e-15 >seq254 Length=118772 Score = 125 bits (138), Expect = 6e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||| ||||| || || | ||||||| | ||| | |||| | Sbjct 32984 ACCGGCAAGACCATCACCCTTGAGGTTGAGTCATCCGATACGATCGACAACGTCAAGTCA 32925 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| || |||||||| || || || || || || || | || || |||||||| Sbjct 32924 AAGATTCAGGATAAGGAGGGCATCCCTCCGGACCAGCAGCGCTTGATTTTCGCCGGCAAG 32865 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| ||| ||| |||||||||||||||| ||||| |||||||| ||||| Sbjct 32864 CAGCTCGAGGATGGCCGTACCCTCTCCGATTACAACATCCAAAAGGAATCCACTCTACAT 32805 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 | || |||| | || |||||| Sbjct 32804 CTCGTCCTGCGCCTTCGTGGAGGT 32781 Score = 109 bits (120), Expect = 5e-19 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||| ||||| ||||| | |||| ||| | ||| || |||| Sbjct 33267 ACCGGCAAGACCATCACCCTTGAGGTGGAGTCGTCCGACACCATCGACAATGTCAAGAGC 33208 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || |||||||||||||| || || || || || || || || || |||||||| Sbjct 33207 AAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAG 33148 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | |||||| |||||| ||||||| |||||||| || || || || || Sbjct 33147 CAGCTTGAGGATGGTCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCTAC 33095 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || ||| | || || || || |||| | ||||| ||| | | | Sbjct 32552 ATGCAAATCTTTGTCAAGACTCTTACTGGCAAGACTATCACATTGGAAGTCGAATCGAGC 32493 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | | ||| || || ||||||||||||||||| || || || || Sbjct 32492 GATACCATCGACAACGTGAAATCGAAGATCCAAGACAAGGAGGGTATCCCGCCTGACCAG 32433 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || ||||| || || ||| || || ||| ||||| Sbjct 32432 CAGCGTCTCATCTTCGCTGGTAAGCAGTTGGAAGACGGCCGAACGCTCAGCGACTACAAT 32373 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || || || || Sbjct 32372 ATTCAGAAGGAGTCGAC 32356 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||||||||||||||| || ||||| || || || || ||||| ||||| Sbjct 32696 AAGATTCAGGACAAGGAGGGTATTCCCCCGGATCAGCAGCGACTCATTTTTGCTGGCAAG 32637 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | || || ||| || |||| || |||||||| || || || ||||| | || Sbjct 32636 CAGCTCGAAGACGGCCGTACTCTCTCAGACTACAACATCCAGAAGGAGTCCACTCTCCAC 32577 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 || || | || |||| || ||| Sbjct 32576 TTGGTGCTCCGTCTGCGTGGTGGT 32553 >seq275 Length=365033 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 22311 AGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGA 22370 |||||||||||| ||||| || || || || ||||| || || |||||||| ||| | || Sbjct 273730 AGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGA 273789 Query 22371 GGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTT 22430 |||| ||||||| ||||||| |||||||| || || || || ||| | || || || | Sbjct 273790 GGATGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCGACCCTGCACTTGGTCCT 273849 Query 22431 GCGATTGCGCGGAGG 22445 || |||| ||||| Sbjct 273850 CCGTCTGCGTGGAGG 273864 >seq241 Length=242151 Score = 96.9 bits (106), Expect = 3e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || ||| |||| || || ||||| | |||| ||| | ||| || |||| Sbjct 46661 ACCGGCAAGACGATCACCCTCGAGGTGGAGTCGTCCGACACCATCGACAATGTCAAGTCC 46720 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| ||||| || || || || || | || || |||||||| Sbjct 46721 AAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCTTGATCTTCGCCGGCAAG 46780 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | ||||| |||||| | ||||| |||||||| || || || || || Sbjct 46781 CAGCTCGAGGACGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCAAC 46833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419725053509440