Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq254 167 4e-36 seq230 147 4e-30 seq241 131 3e-25 seq162 105 1e-17 >seq254 Length=118772 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || |||||||| || |||||||| || || ||| Sbjct 32554 CCACCACGCAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCTGAG 32613 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | |||||| || || || ||||||| || || || || ||| Sbjct 32614 AGAGTACGGCCGTCTTCGAGCTGCTTGCCAGCAAAAATGAGTCGCTGCTGATCCGGGGGA 32673 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| | ||| ||| || || ||||||| || || || Sbjct 32674 ATACCCTCCTTGTCCTGAATCTTCGACTTCACGTTGTCAATCGTGTCTGAAGACTCAACC 32733 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||| || || || ||||| ||||||||||| |||||||| Sbjct 32734 TCCAATGTGATAGTCTTGCCAGTGAGTGTCTTGACGAAGATCTGCAT 32780 Score = 158 bits (174), Expect = 2e-33 Identities = 158/205 (77%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| |||||||||| || | ||||| ||||| || ||||||||||| ||||||||| Sbjct 32782 CCTCCACGAAGGCGCAGGACGAGATGTAGAGTGGATTCCTTTTGGATGTTGTAATCGGAG 32841 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || | | || ||||| || || Sbjct 32842 AGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAAGCGCTGCTGGTCCGGAGGG 32901 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||| || |||||||||| ||||||| ||||| || || | ||| || || Sbjct 32902 ATGCCCTCCTTATCCTGAATCTTTGACTTGACGTTGTCGATCGTATCGGATGACTCAACC 32961 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGA 68439 || | ||||||||| || || |||| Sbjct 32962 TCAAGGGTGATGGTCTTGCCGGTGA 32986 Score = 149 bits (164), Expect = 1e-30 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || || ||||| | |||||||| || || ||||| || || || || || ||| Sbjct 32325 TCCACCACGCAGGCGGAGCACCAAGTGCAGTGTCGACTCCTTCTGAATATTGTAGTCGCT 32384 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 ||| || | || ||||| |||||||| || ||||| ||||| | || ||||| || || Sbjct 32385 GAGCGTTCGGCCGTCTTCCAACTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGCGG 32444 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTA 68412 || || ||||||||||| ||||| | || ||| |||||||| || ||| ||||| | Sbjct 32445 GATACCCTCCTTGTCTTGGATCTTCGATTTCACGTTGTCGATGGTATC-GCTCGATTCGA 32503 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||| ||||| || || || || || |||||||| || || ||||| Sbjct 32504 CTTCCAATGTGATAGTCTTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 32552 Score = 127 bits (140), Expect = 4e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| |||||||| | || | || || || ||||| || |||||||| || |||||| Sbjct 33065 CCTCCACGAAGGCGGAGGACGAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGGAG 33124 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || || | || ||||| || || Sbjct 33125 AGGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGAGGG 33184 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| |||||| ||||||||||| | || || || Sbjct 33185 ATACCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATGGTGTCGGACGACTCCACC 33244 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 || | ||||||||| || || || Sbjct 33245 TCAAGGGTGATGGTCTTGCCGGT 33267 >seq230 Length=87271 Score = 147 bits (162), Expect = 4e-30 Identities = 322/473 (68%), Gaps = 12/473 (3%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||| || ||||||||||| || || || ||| |||||||||| ||||||| | Sbjct 45787 CATGACACCAGCCTTCTGGTAGTCACCGACGCGCTTCTCAAAGAAGTTGGTCTTGCCCGC 45728 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054 || || ||| |||||||||||| |||||||| |||| | | |||| || ||| Sbjct 45727 CAGAGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGTACTTGTTGTTACC 45668 Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114 || | | || ||| |||||||| ||||| |||||||||| ||| || | ||||| Sbjct 45667 AAGGGACAGCAGAAGGCGATCAGCCACAAACTCAATGTACTGGCACATGAGTGCAGAGTT 45608 Query 10115 CATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGC 10174 |||||||| || |||||||| || || | ||| ||||| ||| | ||||| || Sbjct 45607 CATGCCAAGCAGAGCGCAGGGGAGAGCATCTGTGAGGAACTCCTTCTCGATCGCGACGGC 45548 Query 10175 TTCCTCGACGATGCTCTTTAC--CA-CGTCAAGGGACAGCTTGTTCTCGAGCTTCGAATA 10231 || || |||| || || || | | | || || || | | ||| || | Sbjct 45547 CTCAGTGATGATGGCCTGGACGGCATCCTTACTGG--GGCGTG-TGTTGAGGAGAGAGAA 45491 Query 10232 CAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAA 10291 ||||| |||| | ||| | |||||||||||| ||| | |||||| || || Sbjct 45490 GAGGAGGCAGGCAAAGTCAGTGTGCATGCCCTCGTCGCGAGAGATCAGCTCGTTTGAGAA 45431 Query 10292 ACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGG-CGCAGAACGACCCGG 10350 ||||||||||| || || || || || |||||| |||| ||| |||||| ||| Sbjct 45430 TGTGAGACCGGGCATCAGGCCACGCTTCTTCAACCAGAAGATGGACGC-GAACGAGCCGC 45372 Query 10351 AGAACAGAAGA--CCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGG 10401 || |||||| ||||| ||| | | ||||| || || | ||||||| Sbjct 45371 TGA--AGAAGATGCCCTCAACGGCGGCGAATGCGACCAGACGGTTGGCGAAGG 45321 >seq241 Length=242151 Score = 131 bits (144), Expect = 3e-25 Identities = 152/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| ||||| ||||| || |||||||| || ||||| Sbjct 46863 CCACCACGGAGACGGAGGACCAAGTGGAGCGTTGACTCCTTCTGGATGTTGTAGTCGGAC 46804 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || | | || ||||| || ||| Sbjct 46803 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGGA 46744 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | |||||| ||||||||||| | || || || Sbjct 46743 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 46684 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGA 68439 || | |||||| || || || |||| Sbjct 46683 TCGAGGGTGATCGTCTTGCCGGTGA 46659 >seq162 Length=333193 Score = 105 bits (116), Expect = 1e-17 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 225410 TTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTCAAGGAAGCCAGAGTCGTGGGAC 225469 |||| |||||| ||| ||| | | ||| || |||| |||||||| |||||||| || Sbjct 239190 TTCTGCTCGTAGTGATAAATGTCGGTGCAGACCTCGTCGAGGAAGCCGGAGTCGTGAGAG 239249 Query 225470 ACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGCGTGATG-AGCCATGCCACGTT 225528 || || | | | | | || | |||||||| | | || ||||| || ||||| Sbjct 239250 ACGATCAAGCTGGTGATCTCGGTGTGCTTCTTGAGGTAC-TCCTGTAGCCAAGCAACGTT 239308 Query 225529 GCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTCAGCATCAATGAGGAT 225588 | |||||||| ||| || ||||||||||| ||||||| || ||| || || || || Sbjct 239309 GGCGACGTCCAAGTGATTGGTAGGTTCGTCGAGAAGCAAGACGTCCGCGCGCATAAGCAT 239368 Query 225589 GGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGAGCCGA 225638 ||| || | | || |||||||| ||||| || || |||| ||||||| Sbjct 239369 GGCTCGGGCCAAAGCAAGCTTCATCTTCCATCCTCCAGACAAAGAGCCGA 239418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921615764318720