Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq230 306 7e-78 seq20 199 7e-46 >seq230 Length=87271 Score = 306 bits (338), Expect = 7e-78 Identities = 378/508 (74%), Gaps = 17/508 (3%) Strand=Plus/Plus Query 42645 AAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAG 42703 |||||||| |||||||| ||||| |||||| || | || | | || |||| | | | Sbjct 45275 AAGAAGGCTGACTGGGCCCTCAAATGGATCTC-AGACAAGAACTCGACCTTCGCCAACCG 45333 Query 42704 GCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTT 42763 ||||| || || ||||||| ||||||||||||||| ||| | ||||| |||||||| Sbjct 45334 TCTGGTCGCATTCGCCGCCGTTGAGGGCATCTTCTTCAGCGGCTCGTTCGCGTCCATCTT 45393 Query 42764 CTGGCTCAAGCAGAAGGTGTC--GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGC 42821 |||| | ||| || ||| | ||||||||| ||||| ||||| ||||| || ||| Sbjct 45394 CTGGTTGAAGAAG--CGTGGCCTGATGCCCGGTCTCACATTCTCAAACGAGCTGATCTCT 45451 Query 42822 AGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCAC 42881 | |||||||| |||| | ||||||||||||||||| ||||| | ||||| ||| Sbjct 45452 CGCGACGAGGGCATGCACACTGACTTTGCCTGCCTCCTCTTCTC---TCTCCTCA-ACAC 45507 Query 42882 AAGCCCTCG-AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGA 42940 | |||| | ||||| |||| |||||||||||| |||||||| | |||||||||||| Sbjct 45508 ACGCCCCAGTAAGGATGCCGTCCAGGCCATCATCACTGAGGCCGTCGCGATCGAGAAGGA 45567 Query 42941 GTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAA 43000 ||||||||| | | || ||| | ||| | ||||||||| | ||||||||| | Sbjct 45568 GTTCCTCACAGATGCTCTCCCCTGCGCTCTGCTTGGCATGAACTCTGCACTCATGTGCCA 45627 Query 43001 GTACATCCAGTACGTCGCCGA---CCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTA 43057 |||||| ||| || || || || ||| |||| || | ||| || | ||| Sbjct 45628 GTACATTGAGTTTGTGGCTGATCGCCTTCTGCTGTCCC---TTGGTAACAACAAGTACTA 45684 Query 43058 CAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTT 43117 |||| | | |||||||||||| |||||||||||||| ||| ||||||||||||||| Sbjct 45685 CAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTGGCGGGCAAGACCAACTT 45744 Query 43118 TTTCGAGAAGCGCGTCGCCGACTACCAG 43145 || ||||||||||||| ||||||||| Sbjct 45745 CTTTGAGAAGCGCGTCGGTGACTACCAG 45772 >seq20 Length=105358 Score = 199 bits (220), Expect = 7e-46 Identities = 981/1539 (64%), Gaps = 57/1539 (4%) Strand=Plus/Plus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || || |||||||| || | |||||| ||||| ||||| ||| || || Sbjct 11971 GTTGACGACTTGAAACTCGCCGGCCAGCACACGGCGAGAGTAGATGTTTGACGTGTAGGG 12030 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||||| || ||| | || || || ||||| | ||| || ||||||||||| | || Sbjct 12031 CTCGAAGCACTCGTTATTCCCAAGAATCTGAGACGTAGATGCGGTCGGCATGGGTGCAAC 12090 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCA 244269 || ||| || | ||||||||| || |||| | || || | || |||| Sbjct 12091 CAAAAGAGAATTGCGAACGCCGTGC---TG--TGCGATCT-TGTCCTTCAGCGAGGCCCA 12144 Query 244270 CATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCT 244329 || || |||| || | || ||| | ||||| ||| |||| ||| | || | | Sbjct 12145 -ATCCCAGAGA--TCAGTGGGTGTGACGTTCCACAGGTCGTACTGAAGCTGGCCTTGGGA 12201 Query 244330 GACGGGGCTGCCCTCGTAGGTCGGGTA-GGGACCGTCGCGCTGGGCCAGCTTACA-GCTC 244387 || || || ||||| |||| ||| ||| || | | || || | | || | | Sbjct 12202 GATAGGAGAACCTTCGTATGTCGCGTAAGGGCCCAGCTC-CTTAGCAATGTCGCAAGATG 12260 Query 244388 TCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTG 244447 || |||||| |||| ||||||||||||||||||| |||| | | ||||| | Sbjct 12261 AGGT-GAGGGCCGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTTCTTGGCCTCG 12319 Query 244448 CCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATG 244507 | |||||| | || | || |||| | || || || ||||| || |||| Sbjct 12320 GGCGACTCGAAGGGCAAGCGTAGTGCCAGGAAGGCATCAGCGAGACCCTGAACACCGAGC 12379 Query 244508 CCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCG 244567 ||||| |||||||| || ||| ||| ||||| || ||||| |||| | Sbjct 12380 CCGATAGGTCTGTGACGGAAATTGCTGCGACGTGCTTCCTCTACTGGGTAGTGGTTGACT 12439 Query 244568 TCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAG 244627 ||||| | |||||| | ||||||||| | | || ||| ||| || | ||| Sbjct 12440 TCGATGATCTTGTTCAAGTTGCGGGTAACAACTTGGGTGACTTCGTGGAGTTTGTTGAAG 12499 Query 244628 TCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTG 244687 || |||| | ||| | | ||| || ||| | ||| |||| | Sbjct 12500 TCAAACTCC----------CCGCGCTTATAGTCC--ACGAACGAGGGGAGCGCGAGCGAG 12547 Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747 || ||||| || || || ||||| || | ||||||| ||| ||||||||||||||| Sbjct 12548 GCGAGGTTACATACCGCTACCTCATCAGGAGCAGTGTACTCGACGATCTCGGTGCAGAGG 12607 Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807 ||| || ||||| || || | || || ||| ||| |||||| || || ||| Sbjct 12608 TTAGAGCTGCGAATGGTACCAAGATTCTTTTGGTTGCTCTTCCGGTTGCAAGCATCTTTG 12667 Query 244808 TAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCC 244867 ||||||||||| || || ||||| ||| || | |||| | | |||||| | Sbjct 12668 TAGAGCATGAAAGGGTTACCAGTCTCCGTCTGAGCCTCAAGGATGGCATACCAGAGCTTT 12727 Query 244868 CTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCG 244927 || || ||| ||| | | || ||||| || ||| || ||||| Sbjct 12728 TGGGCGCGAACAGTCTCCCGACCACGGTTGTCACGTTCGTAACGATGGTAGAGCTCCTCG 12787 Query 244928 AACTCGGGGCCCCAGACCTCGTCTAGGCC-GGGGCA-CGACGCCGGGCACATGAGACTCC 244985 ||||| || | || ||| | || || ||||| || | ||||| | || ||| Sbjct 12788 AACTCATCACCATACACGTCGGCAAGACCAGGGGCTTCGTTG--GGGCAGAATAGCGTCC 12845 Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045 |||| || |||| || | || |||||| ||||| || ||||| || || | ||||| Sbjct 12846 ACTCACCATTCTCCTGAACGCGCTTCATGAAAAGGTCTGGAATCCATAGTGCGTAGAAGA 12905 Query 245046 GGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGA 245105 |||| | || | || || |||| |||||| | || || | || | |||| Sbjct 12906 GGTCACGGGCACGAACTTCCTCTTTGCCATGGTTCTTGCGAAGATCAAGGAAACCGAAGA 12965 Query 245106 CGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCT 245165 | || | ||||| ||||||| ||||| |||| |||||| || ||||||||||| || | Sbjct 12966 CATCAGCATGCCATGGCTCCAGGTAGATGGCGAAGGCGCCAGGGCGCTTGTTGCCACCTT 13025 Query 245166 GGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTA 245221 | | || | | ||||| |||| ||| || || | || | | ||||| Sbjct 13026 G----ATCAACATAACGAGCCGTGTTGTTGTAGACACGAAGCATGGGAATGAGACCGTTC 13081 Query 245222 GAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTG--AGGTTGCTGATGGACA 245279 || || |||||||| |||||| | ||| || | | | | | || | || | Sbjct 13082 GATGTACCATTGGTGCCACCGATGTAAGAGCCAGTGGCACGGATACGGTGAACGTTGAGA 13141 Query 245280 TGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGC 245339 || | ||||| ||| ||||||||| | ||| || |||||| ||||| |||| Sbjct 13142 --CCAATACCGCCAGCGGTCTTGGAGATCAAGGCACAAGTCTTGAGTGTGTCGTAGATGC 13199 Query 245340 CCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGC 245399 | || ||||||||| |||||||| || || |||||||| |||| || || || || Sbjct 13200 CATCAATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGACGACATTTGAGGATTTGGTG 13259 Query 245400 TGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGT 245459 ||| || ||||| || || || ||||| || ||||| ||| | | | ||| Sbjct 13260 TGCCCGCATTGAAGAGGGTAGGCGAAGCGTGTGTGAAGTACTTTTGCGACATGTAGTCGT 13319 Query 245460 ACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCAC-CTCATGAGG 245518 | |||| | | |||||||| || || ||||| | || ||| | ||| | Sbjct 13320 AAGTCTCAATCGCCTTCTCGATGTTCTCTCCATGGATGCCGACAGC-CACGCGCATCAAC 13378 Query 245519 GTGTGCTG-GGGCGTCTCGATGGGTCCCTCGGGTCCCTT------GAGCATGTAGGAGCG 245571 |||| || ||||| ||| || ||| | || || ||| | ||| ||||| Sbjct 13379 ATGTGTTGTGGGCG-CTC---GGCAACCTTG---CCGTTGATGCGGAGAAGGTATGAGCG 13431 Query 245572 CTCGAGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTC 245610 ||||||||||||||| |||||| || |||| ||||| Sbjct 13432 CTCGAGCGTCTTGAAGCCAAAGAACTGGTAGTTGAAGTC 13470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944332400757760