Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq254 150 4e-31 seq241 89.7 1e-12 >seq254 Length=118772 Score = 150 bits (166), Expect = 4e-31 Identities = 148/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || ||||| |||||| |||||| || |||||||| || || || || |||||| Sbjct 32362 TCCTTCTGAATATTGTAGTCGCTGAGCGTTCGGCCGTCTTCCAACTGCTTACCAGCGAAG 32421 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| || | ||||| || || || || ||||| |||| ||||||||| Sbjct 32422 ATGAGACGCTGCTGGTCAGGCGGGATACCCTCCTTGTCTTGGATCTTCGATTTCACGTTG 32481 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | |||||||||||| ||||| | ||||| ||||| || || ||||||||||| Sbjct 32482 TCGATGGTATCGCTCGATTCGACTTCCAATGTGATAGTCTTGCCAGTAAGAGTCTTGACA 32541 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 32542 AAGATTTGCAT 32552 Score = 95.1 bits (104), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | ||| || || |||||||| | || || || || || Sbjct 32590 TCCTTCTGGATGTTGTAGTCTGAGAGAGTACGGCCGTCTTCGAGCTGCTTGCCAGCAAAA 32649 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || ||||| ||| || ||| || || || || ||||| || |||| |||||| Sbjct 32650 ATGAGTCGCTGCTGA---TCCGGGGGAATACCCTCCTTGTCCTGAATCTTCGACTTCACG 32706 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || || || || || | ||||| ||||| || || || |||||| Sbjct 32707 TTGTCAATCGTGTCTGAAGACTCAACCTCCAATGTGATAGTCTTGCCAGTGAGTGTCTTG 32766 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 32767 ACGAAGATCTGCAT 32780 Score = 91.5 bits (100), Expect = 3e-13 Identities = 149/211 (71%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || || || | || |||||||| | || || || ||||| || |||| Sbjct 33061 CATG-CCTCCACGAAGGCGGAGGACGAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGT 33119 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| ||| ||||| || || || | || || || ||||||||||| ||||| || Sbjct 33120 CGGAGAGGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCG 33179 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGAT 288420 ||||| || || || |||||||| || ||| || || || || || | ||| ||| Sbjct 33180 GAGGGATACCCTCCTTGTCCTGGATCTT-GCTCTTGACATTGTCGATGGTGTCGGACGAC 33238 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCA 288451 || || || || ||||| ||||| ||||||| Sbjct 33239 TCCACCTCAAGGGTGATGGTCTTGCCGGTCA 33269 >seq241 Length=242151 Score = 89.7 bits (98), Expect = 1e-12 Identities = 144/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | || | ||| || || ||||| || ||||||| Sbjct 46863 CCACCACGGAGACGGAGGACCAAGTGGAGCGTTGACTCCTTCTGGATGTTGTAGTCGGAC 46804 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || || || |||||||||| ||||| || || ||| Sbjct 46803 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGG---TCCGGG 46747 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || |||||||| || | || || || || || | ||| ||| || Sbjct 46746 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCC 46687 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGT 288449 || ||||| ||||||||||| ||||| Sbjct 46686 ACCTCGAGGGTGATCGTCTTGCCGGT 46661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179645694150528