Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq20 178 2e-39 >seq20 Length=105358 Score = 178 bits (196), Expect = 2e-39 Identities = 568/868 (65%), Gaps = 25/868 (3%) Strand=Plus/Plus Query 114464 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 114523 || || |||| || || || ||||| || | |||||| | |||||||||| | Sbjct 12533 GGGAGCGCGAGCGAGGCGAGGTTACATACCGCTACCTCATCAGGAGCAGTGTACTCGACG 12592 Query 114524 ATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 114583 || || || || | || || || |||||| || | |||||||| || ||| | Sbjct 12593 ATCTCGGTGCAGAGGTTAGAGCTGCGAATGGTACCAAGATTCTTTTGGTTGCTCTTCCGG 12652 Query 114584 TTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 114643 || || ||||| ||||| |||||| | || | || |||||||| || | || || || Sbjct 12653 TTGCAAGCATCTTTGTAGAGCATGAAAGGGTTACCAGTCTCCGTCTGAGCCTCAAGGATG 12712 Query 114644 GCCTTCCAGACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTA-CTT 114702 || | ||||| | ||| | ||||| | | || || ||||| | Sbjct 12713 GCATACCAGAGCTTTTGGGCGCGAACAGTCTCCCGACCACGGTTGTCACGTTCGTAACGA 12772 Query 114703 TGTGTAGAGGGCTTCAAACTCTTCACC---CACGGCCTCTGAGAGCCCTGGTGCCTTATC 114759 || |||||| | || ||||| ||||| |||| || | || || || || | | Sbjct 12773 TG-GTAGAGCTCCTCGAACTCATCACCATACACG---TCGGCAAGACCAGGGGCTTCGTT 12828 Query 114760 TGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGAT 114819 |||||||| || | ||| | |||| ||||| ||| ||||||||||| |||||||| || Sbjct 12829 GGGGCAGAATAGCGTCCACTCACCATTCTCCTGAACGCGCTTCATGAAAAGGTCTGGAAT 12888 Query 114820 CCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAA 114879 ||| || || ||||||| || || ||| |||| || | || || || || | Sbjct 12889 CCATAGTGCGTAGAAGAGGTCACGGGCACGAACTTCCTCTTTGCCATGGTTCTTGCGAAG 12948 Query 114880 CTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTT 114939 || | || | | || ||| || ||||| || |||||||| | |||| | || Sbjct 12949 ATCAAGGAAACCGAAGACATCAGCATGCCATGGCTCCAGGTAGATGGCGAAGGCGCC--- 13005 Query 114940 ACGACGA------CCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCAT 114993 | | || ||| | || | ||||| | || ||| || | || |||||||| Sbjct 13006 AGGGCGCTTGTTGCCACCTTGATCAACATAACGAGCCGTGTTGTTGTAGACACGAAGCAT 13065 Query 114994 TGGAATGATACCATCAGATTGGCCATTTGTCCC-CCGAA-TACGAGACTTATTGGCTCTG 115051 ||||||| ||| | ||| ||||| || || |||| || ||| | | |||| | | Sbjct 13066 GGGAATGAGACCGTTCGATGTACCATTGGTGCCACCGATGTAAGAGCC--AGTGGCACGG 13123 Query 115052 ACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTG 115111 | | || | || | ||||||||| || || ||| ||||| || || | || Sbjct 13124 ATACGGTGAACGTTGAGACCAATACCGCCAGCGGTCTTGGAGATCAAGGCACAAGTCTTG 13183 Query 115112 AGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGAC 115171 || || ||||||| || || || ||| |||| | |||| ||||||||| |||| Sbjct 13184 AGTGTGTCGTAGATGCCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGACGAC 13243 Query 115172 ATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATAC-C 115230 ||||| || ||||||| || || ||||||||||| || | ||||| |||| ||| Sbjct 13244 ATTTGAGGATTTGGTGTGCCCGCATTGAAGAGGGTAGGCGAAGCGTGTGTGAA-GTACTT 13302 Query 115231 TTGGGACATCTTATCGTAGGTCTCCA-AGACGGCGGGAATGTCTTCCCCGTGAATACCGA 115289 ||| ||||| | ||||| ||||| | | | | | |||| || || || || |||| Sbjct 13303 TTGCGACATGTAGTCGTAAGTCTCAATCGCCTTCTCG-ATGTTCTCTCCATGGATGCCGA 13361 Query 115290 TCGAGACCCGCATAAACATGTATTGGGG 115317 | || ||||| ||||||| ||| || Sbjct 13362 CAGCCACGCGCATCAACATGTGTTGTGG 13389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597349299054080