Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq254 96.9 3e-15 seq275 86.0 6e-12 >seq254 Length=118772 Score = 96.9 bits (106), Expect = 3e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || ||||| ||||| ||||||||||| | || ||| || | || Sbjct 32797 AGGACGAGATGTAGAGTGGATTCCTTTTGGATGTTGTAATCGGAGAGGGTACGGCCATCC 32856 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||||||||| |||| | ||||||||||| ||||| || || || || || Sbjct 32857 TCGAGCTGCTTGCCGGCGAAAATCAAGCGCTGCTGGTCCGGAGGGATGCCCTCCTTATCC 32916 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || ||| ||| || || | ||||| | || || || | || | |||| Sbjct 32917 TGAATCTTTGACTTGACGTTGTCGATCGTATCGGATGACTCAACCTCAAGGGTGATGGTC 32976 Query 64412 TTGCCGGT 64419 |||||||| Sbjct 32977 TTGCCGGT 32984 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || || || || |||||||| || | || |||||| | || Sbjct 33080 AGGACGAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCC 33139 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||||||||||||||| | || || ||||||||||| ||||| || || || || || Sbjct 33140 TCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTGTCC 33199 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || || | ||||| || | || | |||| Sbjct 33200 TGGATCTTGCTCTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATGGTC 33259 Query 64412 TTGCCGGTCA 64421 |||||||||| Sbjct 33260 TTGCCGGTCA 33269 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||||| | || | || || || || || |||||||| |||| Sbjct 32553 ACCACCACGCAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCTGA 32612 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || || || ||||||| ||||||||||| ||| ||||||| |||||||| || || || Sbjct 32613 GAGAGTACGGCCGTCTTCGAGCTGCTTGCCAGCAAAAATGAGTCGCTGCTGATCCGGGGG 32672 Query 64336 AATTCCTTCTTTTTCTTGTATTTT 64359 ||| || || || || || || || Sbjct 32673 AATACCCTCCTTGTCCTGAATCTT 32696 >seq275 Length=365033 Score = 86.0 bits (94), Expect = 6e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || |||||||| || | || |||||| | || || |||||||||||| Sbjct 273834 GTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCG 273775 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | ||||| ||||||||||| || ||||| || || || ||| Sbjct 273774 GCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCT 273730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499641202557440