Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq20 214 2e-50 >seq20 Length=105358 Score = 214 bits (236), Expect = 2e-50 Identities = 611/929 (66%), Gaps = 18/929 (2%) Strand=Plus/Minus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | | ||||| |||||| || || ||| || ||||| ||| || | ||| Sbjct 13464 AACTACCAGTTCTTTGGCTTCAAGACGCTCGAGCGCTCATACCTTCTCCGCATCAACGGC 13405 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | |||| ||||||| || || || || |||||||||| || |||| || || || | Sbjct 13404 AAGGTTGCCGAGCGCCCACAACACATGTTGATGCGCGTGGCTGTCGGCATCCATGGAGAG 13345 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 |||| ||| | | | ||| | ||||| | | ||| | || || Sbjct 13344 AACATCGAGAAGGCGATTGAGACTTACGACTACATGTCGCAAAAGTACTTCACACACGCT 13285 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT- 93953 | || ||||| ||||| ||||| || || || || ||||| || || ||||| || Sbjct 13284 TCGCCTACCCTCTTCAATGCGGGCACACCAAATCCTCAAATGTCGTCCTGCTTCCTCATC 13225 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013 ||| | |||| ||| ||| || || | ||||| |||||| ||||| || Sbjct 13224 GAC-ATGAAGGAGGACAGCATTGATGGCATCTACGACACACTCAAGACTTGTGCCTTGAT 13166 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTA--CGTGCCAGGGGTTCC 94071 ||| || ||| || || || || ||| || ||| |||| ||||||| || || Sbjct 13165 CTCCAAGACCGCTGGCGGTATTGGTCTCAACGTTCAC--CGTATCCGTGCCACTGGCTCT 13108 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 |||||| | || |||||||| || || ||||| ||| | || ||||| || |||| |||| Sbjct 13107 TACATCGGTGGCACCAATGGTACATCGAACGGTCTCATTCCCATGCTTCGTGTCTACAAC 13048 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 ||| |||| || || || || || ||||| | | | || | ||||| |||| Sbjct 13047 AACACGGCTCGTTATGTTGATCAAGGTGGCAACAAGCGCCCTGGCGCCTTCGCCATCTAC 12988 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 || ||||| ||||| || || || | |||| | || || || |||||||| ||||| Sbjct 12987 CTGGAGCCATGGCATGCTGATGTCTTCGGTTTCCTTGATCTTCGCAAGAACCATGGCAAA 12928 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || | | ||| | |||||||||||||| || ||| | ||||||||||| ||||| Sbjct 12927 GAGGAAGTTCGTGCCCGTGACCTCTTCTACGCACTATGGATTCCAGACCTTTTCATGAAG 12868 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 ||||| || | || | |||| || || || ||||| ||| || || || || Sbjct 12867 CGCGTTCAGGAGAATGGTGAGTGGACGCTATTCTGCCCCAACGAAGCCCCTGGTCTTGCC 12808 Query 94372 GACGTTTGTG--GATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAA-- 94427 ||||| | || ||| | | || || || | || |||||||||| | | ||| Sbjct 12807 GACGTGTATGGTGAT-GAG-TTCGAGGAGCTCTACCATCGTTACGAA---CGTGACAACC 12753 Query 94428 --GGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTG 94485 || | || || | | || ||||| ||| || ||| | || | ||| | Sbjct 12752 GTGGTC-GGGAGACTGTTCGCGCCCAAAAGCTCTGGTATGCCATCCTTGAGGCTCAGACG 12694 Query 94486 GAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAG 94545 ||||| |||| || | ||| | | ||| || || |||| ||| |||||| || Sbjct 12693 GAGACTGGTAACCCTTTCATGCTCTACAAAGATGCTTGCAACCGGAAGAGCAACCAAAAG 12634 Query 94546 CACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCG 94605 | || || || ||||| || || ||||||||||| |||||||| ||| |||| Sbjct 12633 AATCTTGGTACCATTCGCAGCTCTAACCTCTGCACCGAGATCGTCGAGTACACTGCTCCT 12574 Query 94606 GACGAGATTGCTGTGTGTAACCTGGGCTC 94634 || ||| | || || |||||||| | ||| Sbjct 12573 GATGAGGTAGCGGTATGTAACCTCGCCTC 12545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494719637992960