Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq230 181 1e-40 seq20 138 1e-27 seq241 102 8e-17 seq254 93.3 4e-14 >seq230 Length=87271 Score = 181 bits (200), Expect = 1e-40 Identities = 357/523 (68%), Gaps = 25/523 (5%) Strand=Plus/Plus Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCG-AGAGCGACACCGC 52384 || || ||| ||||||| |||||| | ||||| | || |||||| ||| | | | | | Sbjct 45260 GTTCCATGCATTCGCAAGAAGGCTGACTGGGCCCTCAAATGGATCTCAGA-CAAGAACTC 45318 Query 52385 CACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAG 52444 || | ||| | || |||| || |||||| || |||||| | || || |||| Sbjct 45319 GACCTTCGCCAACCGTCTGGTCGCATTCGCCGCCGTTGAGGGCATCTTCTTCAGCGGCTC 45378 Query 52445 CTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAA 52504 || || ||||||| | | || | | ||| | |||||||| || || ||| || Sbjct 45379 GTTCGCGTCCATCTTCTGGTTGAAGAAGCGTGGCCTGATGCCCGGTCTCACATTCTCAAA 45438 Query 52505 CGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTAC----- 52559 |||| |||| || |||||||| || ||||||| |||||||| |||||| || | Sbjct 45439 CGAGCTGATCTCTCGCGACGAGGGCATGCACACTGACTTTGCCTGCCTCCTCTTCTCTCT 45498 Query 52560 ----AAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGA 52615 || || ||| || | || |||| | | ||| | ||| ||| || Sbjct 45499 CCTCAACACACGC----CCCAGTAA--GGATGCCG------TCCAGGCCATCATCACTGA 45546 Query 52616 GGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCAT 52675 ||| || || ||||| |||||||| | || | || || || || ||||| ||||| Sbjct 45547 GGCCGTCGCGATCGAGAAGGAGTTCCTCACAGATGCTCTCCCCTGCGCTCTGCTTGGCAT 45606 Query 52676 GAACGC-GCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGC 52734 |||| | ||| || |||||| ||||||| ||||||||||| ||||| || || || | Sbjct 45607 GAACTCTGCACTC-ATGTGCCAGTACATTGAGTTTGTGGCTGATCGCCTTCTGCTGTCCC 45665 Query 52735 TCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGC 52794 | || | ||||||| |||||| ||| || || || || ||| | ||||| || | Sbjct 45666 TTGGTAACAACAAGTACTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCTC 45725 Query 52795 TTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 | | ||||||||||||||| || |||||||| ||||| || || Sbjct 45726 TGGCGGGCAAGACCAACTTCTTTGAGAAGCGCGTCGGTGACTA 45768 >seq20 Length=105358 Score = 138 bits (152), Expect = 1e-27 Identities = 914/1457 (63%), Gaps = 53/1457 (4%) Strand=Plus/Plus Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087 ||||||| |||||||||||||| |||| ||| || | | || | || ||| | | Sbjct 11970 GGTTGACGACTTGAAACTCGCCGGCCAGCACACGGCGAGAGTAGATGTTTGACGTGTAGG 12029 Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147 | || ||| | |||||||| || || || |||| ||| | ||||||||||||| || | Sbjct 12030 GCTCGAAGCACTCGTTATTCCCAAGAATCTGAGACGTAGATGCGGTCGGCATGGGTGCAA 12089 Query 153148 CCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCCC 153207 |||| | |||||| || | ||||||| | || | |||||||| || |||||||| Sbjct 12090 CCAAAAGAGAATTGCGAACGCCGTGCTGTGCGATCTTGTCCTTCAGCGAGGCCCAATCCC 12149 Query 153208 ACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGAC 153267 | || | | ||||| ||||||||| ||||||||| | | ||| | | ||| Sbjct 12150 AGAGATCAGTGGGTGTGACGTTCCACAGGTCGTACTGAAGCTGGCCTTGGGAGATAGGAG 12209 Query 153268 TGCCGGCAAACGTACTGT-AGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCGAGC 153326 || | | || || || || | | || || | ||||| | ||| Sbjct 12210 AACCTTCGTATGTCGCGTAAGGGCCCAGCTCCTT-AGCAATGTCGCAAGATGAGGTGAGG 12268 Query 153327 GCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGC----- 153381 || | | ||| ||||| ||| ||| || | |||| ||||||| || Sbjct 12269 GCCGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGA--------GCTTCTTGGCCTCGG 12320 Query 153382 ---TCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGC 153438 |||| | |||| ||| || || ||||| || || |||||||| | ||||| | Sbjct 12321 GCGACTCGAAGGGCAAGCGTAGTGCCAGGAAGGCATCAGCGAGACCCTGAACACCGAGCC 12380 Query 153439 CGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCTATGGGATAGTGATTGCGAT 153498 |||| |||| || |||||||| | || | ||| || ||||| ||| | Sbjct 12381 CGATAGGTCTGTGACGGAAATTGCTGCGACGTGCTTCCTCTACTGGGTAGTGGTTGACTT 12440 Query 153499 CGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAAT 153558 |||| || ||||| | |||||| || |||| || | | | ||||| | ||| | Sbjct 12441 CGATGATCTTGTTCAAGTTGCGGGTAACAACTTGGGTGACTTCGTGGAGTTTGTTGAAGT 12500 Query 153559 CATA------GGTCATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGAT 153612 || | | | | | ||| | || ||| | | | || | || || || | Sbjct 12501 CAAACTCCCCGCGCTTATAGTC--CACGAACG-AGGG---GAGCGCGAGCGAGGCGAGGT 12554 Query 153613 TACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTT---GC 153669 |||| || || ||| || | | |||||| |||||||||| ||||||||| || Sbjct 12555 TACATACCGCTACCTCATCAGGAGCAGTGTACTCGACGATCTCGGTGCAGAGGTTAGAGC 12614 Query 153670 TGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGA 153729 ||| ||| || | ||| | || ||||| || || ||||| || |||||| ||| Sbjct 12615 TGC---GAATGGTACCAAGATTCTTTTGGTTGCTCTTCCGGTTGCAAGCATCTTTGTAGA 12671 Query 153730 GCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT---AAACCTATGCAGGTCCT 153786 ||||| | || || ||||| || | || | ||| | ||| || | | Sbjct 12672 GCATGAAAGGGTTACCAGTCTCCGTCTGAGCCTCAAGGATGGCATACC---AGAGCTTTT 12728 Query 153787 GCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAA 153846 | || || || || |||| ||| || | ||||| || | ||| || ||| | Sbjct 12729 GGGCGCGAACAGTCTCCCGACCACGGTTGTCACGTTCGTAACGATGGTAGAGCTCCTCGA 12788 Query 153847 ACTCGTCGCCGTAGCAGTCGGCGAGGCC-GGGACACTGATGCGGACACATCAGCGACCAC 153905 |||| || || || |||||| || || ||| | | || || || | |||| |||| Sbjct 12789 ACTCATCACCATACACGTCGGCAAGACCAGGGGCTTCGTTG-GGGCAGAATAGCGTCCAC 12847 Query 153906 ATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGG 153965 | | | | | ||||| |||||| || || || | ||| || ||||| | |||| Sbjct 12848 TCACCATTCTCCTGAACGCGCTTCATGAAAAGGTCTGGAATCCATAGTGCGTAGAAGAGG 12907 Query 153966 TCGCGCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTC--AGATTGAGCACGCTATAGA 154023 || || || ||||| | ||||| | | || | |||| || | | ||| Sbjct 12908 TCACGGGCACGAACTTCCTCTTTG-CCATGGTTC-TTGCGAAGATCAAGGAAACCGAAGA 12965 Query 154024 TGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCT 154080 || || ||||| || || | ||||| ||| | ||| || ||| || || || | Sbjct 12966 CATCAGCATGCCATGGCTCCAGGTAGATGGCGAAGGCGCCAGGGCGCTTGTTGCCACCTT 13025 Query 154081 GATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGG 154140 |||| || | || || | |||||| |||| || | |||||| || ||| | | | Sbjct 13026 GATCAACATAACGAGCCGTGTTGTTGTAGACACGAAGCATGGGAATGAGACCGTTCGATG 13085 Query 154141 TGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAA 154200 | || ||||| | ||| | ||| ||| || | | || ||||| | |||| Sbjct 13086 TACCATTGGTGCCACCGATGTAAGAGCCAGTGGCACGGATACGGTGAACGTTGAGACCAA 13145 Query 154201 TGCCGCCGCCGTACTTTGATATGGCAGCGC-AGTCGCCCAGCGTCCTGTAGATGCCGTCG 154259 | ||||| || ||| || || || | |||| || || ||||||||| || Sbjct 13146 TACCGCCAGCGGTCTTGGAGATCAAGGCACAAGTC-TTGAGTGTGTCGTAGATGCCATCA 13204 Query 154260 ATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCC 154319 ||||| || || | | ||| | ||| || || ||||||| ||| | | || ||| Sbjct 13205 ATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGACGACATTTGAGGATTTGGTGTGCCC 13264 Query 154320 GCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTT 154379 || |||||||| || ||||| || || ||||| ||| | ||| || Sbjct 13265 GCATTGAAGAGGGTAGGCGAAGCGTGTGTGAAGTACTTTTGCGACATGTAGTCGTAAGTC 13324 Query 154380 TCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGC 154439 || || || | ||||| | || || || ||||||| || |||||||| | |||||| Sbjct 13325 TCAATCGCCTTCTCGATGTTCTCTCCATGGATGCCGACAGCCACGCGCATCAACATGTGT 13384 Query 154440 TGCGGACGTTCGGCGAC 154456 || || || ||||| || Sbjct 13385 TGTGGGCGCTCGGCAAC 13401 >seq241 Length=242151 Score = 102 bits (112), Expect = 8e-17 Identities = 128/173 (74%), Gaps = 2/173 (1%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||| || |||||||||||| || ||| || ||||||||| || || |||| Sbjct 46832 TTGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGG 46773 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 |||| | ||||| |||||||| || || || || ||||| ||| || || | Sbjct 46772 CGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA 46713 Query 138539 -ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGT 138590 ||||| | | |||||||| |||||||||||||| || | ||| || || || Sbjct 46712 CATTGT-CGATGGTGTCGGACGACTCCACCTCGAGGGTGATCGTCTTGCCGGT 46661 >seq254 Length=118772 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||| ||||||||||| | || || ||| || | || ||||| | Sbjct 32359 GACTCCTTCTGAATATTGTAGTCGCTGAGCGTTCGGCCGTCTTCCAACTGCTTACCAGCG 32418 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| || || ||||| || ||||| ||| || ||| | Sbjct 32419 AAGATGAGACGCTGCTGGTCAGGCGGGATACCCTCCTTGTCTTGGATCTTCGATTTCACG 32478 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||| ||| |||| || || || | || | || || ||||| ||||| || Sbjct 32479 TTGTCGATGGTATCGCTCGATTCGACTTCCAATGTGATAGTCTTGCCAGTAAGAGTCTTG 32538 Query 138601 ACAAAAATCTGCAT 138614 ||||| || ||||| Sbjct 32539 ACAAAGATTTGCAT 32552 Score = 89.7 bits (98), Expect = 5e-13 Identities = 125/173 (72%), Gaps = 2/173 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || ||||| || || || |||| Sbjct 33098 GACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCCTCAAGCTGCTTGCCGGCG 33157 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGAT-TTTTTGTTTTAA 138539 |||| || ||||| ||||||||||| ||||| || ||||| ||| || | || | Sbjct 33158 AAGATCAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTGCTCTTGACA 33217 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCA 138592 ||| || | |||||||| |||||||||||| | || | || || || |||| Sbjct 33218 TTG-TCGATGGTGTCGGACGACTCCACCTCAAGGGTGATGGTCTTGCCGGTCA 33269 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || || || | | |||||||| || ||||||||||| Sbjct 32554 CCACCACGCAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCTGAG 32613 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||| ||||| || || || | | | || || ||||| || ||||| || Sbjct 32614 AGAGTACGGCCGTCTTCGAGCTGCTTGCCAGCAAAAATGAGTCGCTGCTGATCCGGGGGA 32673 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| ||| | || | || | ||| || | ||||| | ||||| | Sbjct 32674 ATACCCTCCTTGTC-CTGAATCTTCGACTTCACGTTG-TCAATCGTGTCTGAAGACTCAA 32731 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || ||||| || || || || || |||||||| Sbjct 32732 CCTCCAATGTGATAGTCTTGCCAGTGAGTGTCTTGACGAAGATCTGCAT 32780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496258826910720