Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq230 122 8e-23 seq241 109 5e-19 seq254 107 2e-18 seq20 82.4 7e-11 >seq230 Length=87271 Score = 122 bits (134), Expect = 8e-23 Identities = 339/515 (66%), Gaps = 15/515 (3%) Strand=Plus/Plus Query 47070 CCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAACGTCACT 47129 || ||| | |||| ||||| || |||||| | || | || | || | ||| || Sbjct 45263 CCATGCATTCGCAAGAAGGCTGACTGGGCCCTCAAATGGATCTCAGACAAGAACTCGACC 45322 Query 47130 CTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTT 47189 | ||| | ||| || |||| |||||| ||| |||||| |||||||| ||| || Sbjct 45323 TTCGCCAACCGTCTGGTCGCATTCGCCGCCGTTGAGGGCATCTTCTTCAGCGGCTCGTTC 45382 Query 47190 GCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAG 47249 ||| | || || | |||| | || | |||||||| ||||| || |||||| Sbjct 45383 GCGTCCATCTTCTGGTTGAAGAAGCGTGGCCTGATGCCCGGTCTCACATTCTCAAACGAG 45442 Query 47250 CTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAA----CAC 47305 || ||||| | ||||| ||| ||||||| |||||||||| ||| || | | | Sbjct 45443 CTGATCTCTCGCGACGAGGGCATGCACACTGACTTTGCCTGCCTCCTCTTCTCTCTCCTC 45502 Query 47306 TAGAGTCGATCAAAAGTT-GGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCG 47364 | | || | | || ||| | ||||| | ||| | | || ||||||| Sbjct 45503 AACACACGCCCCA--GTAAGGATG------CCGTCCAGGCCATCATCACTGAGGCCGTCG 45554 Query 47365 CCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGG 47424 | || |||| |||||| || | || ||||| ||| || | | || |||||| | | Sbjct 45555 CGATCGAGAAGGAGTTCCTCACAGATGCTCTCCCCTGCGCTCTGCTTGGCATGAACTCTG 45614 Query 47425 AGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATC 47484 | ||| | ||||||| || ||||| || || ||||| || | || ||| | Sbjct 45615 CACTCATGTGCCAGTACATTGAGTTTGTGGCTGATCGCCTTCTGCTGTCCCTTG-GTAAC 45673 Query 47485 C-CAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGC 47543 |||| ||| || || || || ||||| || ||| | ||||| || || | |||| Sbjct 45674 AACAAGTACTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTGGCGGGC 45733 Query 47544 AAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 ||||||||||| || |||||||||||||| || || Sbjct 45734 AAGACCAACTTCTTTGAGAAGCGCGTCGGTGACTA 45768 >seq241 Length=242151 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | ||| ||||| || || || ||||| ||| | Sbjct 46863 CCACCACGGAGACGGAGGACCAAGTGGAGCGTTGACTCCTTCTGGATGTTGTAGTCGGAC 46804 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| || || ||| ||||||| |||||||| || || || Sbjct 46803 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGGA 46744 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||||| | |||| |||||| | ||| || Sbjct 46743 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 46684 Query 127067 TCGACGGTCACCGTTTTGCCGGT 127089 |||| ||| | ||| |||||||| Sbjct 46683 TCGAGGGTGATCGTCTTGCCGGT 46661 >seq254 Length=118772 Score = 107 bits (118), Expect = 2e-18 Identities = 167/235 (71%), Gaps = 3/235 (1%) Strand=Plus/Plus Query 126880 TACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTA 126939 ||||| |||||| || | || | |||||| || | || ||||| || ||||||||||| Sbjct 32320 TACTG-TCCACCACGCAGGCGGAGCACCAAGTGCAGTGTCGACTCCTTCTGAATATTGTA 32378 Query 126940 ATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999 |||| | ||| || || || | ||| || |||||| |||| | |||||||| || Sbjct 32379 GTCGCTGAGCGTTCGGCCGTCTTCCAACTGCTTACCAGCGAAGATGAGACGCTGCTGGTC 32438 Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTAC 127058 || || || ||||||||||| ||| ||| || | |||| |||| ||| || | Sbjct 32439 AGGCGGGATACCCTCCTTGTCTTGGATCTTCGATTTCACGTTG-TCGATGGTATCGCTCG 32497 Query 127059 TCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||||||| | || | || ||||| || ||||| || ||||| || ||||| Sbjct 32498 ATTCGACTTCCAATGTGATAGTCTTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 32552 Score = 100 bits (110), Expect = 3e-16 Identities = 127/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || || ||||| ||| | |||||| ||| || ||||| || || Sbjct 33095 GTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCCTCAAGCTGCTTGCCG 33154 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| |||||||| || ||||| || |||||||||||| ||| || |||| Sbjct 33155 GCGAAGATCAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTGCTCTTG 33214 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCA 127091 | | |||| |||||| | ||| || || | ||| | || |||||||||| Sbjct 33215 ACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATGGTCTTGCCGGTCA 33269 Score = 86.0 bits (94), Expect = 6e-12 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| || | ||||| || || || ||||| || ||||||||| | || || | Sbjct 32794 CGCAGGACGAGATGTAGAGTGGATTCCTTTTGGATGTTGTAATCGGAGAGGGTACGGCCA 32853 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| | ||||| |||||||| || ||||| ||||||||||| Sbjct 32854 TCCTCGAGCTGCTTGCCGGCGAAAATCAAGCGCTGCTGGTCCGGAGGGATGCCCTCCTTA 32913 Query 127019 TCCGTGATTTTCTG-CTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCA 127076 ||| ||| | | || ||||| |||| |||| || || | ||| || || | ||| | Sbjct 32914 TCC-TGAATCTTTGACTTGACGTTG-TCGATCGTATCGGATGACTCAACCTCAAGGGTGA 32971 Query 127077 CCGTTTTGCCGGT 127089 || |||||||| Sbjct 32972 TGGTCTTGCCGGT 32984 >seq20 Length=105358 Score = 82.4 bits (90), Expect = 7e-11 Identities = 158/227 (70%), Gaps = 7/227 (3%) Strand=Plus/Plus Query 146034 CAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAAC 146093 || ||| ||||| | || | ||| | ||||||| || |||||||||||||| || || Sbjct 11941 CATGTCAACGAGATCTTTCAAGAGCCAGGGGTTGACGACTTGAAACTCGCCGGCCAGCAC 12000 Query 146094 GCGCCTCAGA-TACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCT 146152 || | ||| || | ||| ||| | |||||||| ||||||| || || || |||| Sbjct 12001 ACGGC-GAGAGTAGATGTTTGACGTGTAGGGCTCGAAGCACTCGTTATTCCCAAGAATCT 12059 Query 146153 GCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTGTCTTT 146212 | | ||| | ||||| |||||| || |||| | ||| || | |||||||| || | Sbjct 12060 GAGACGTAGATGCGGTCGGCATGGGTGCAACCAAAAGAGAATTGCGAACGCCGTG-CTGT 12118 Query 146213 G-AATCTTTTCCCGTAGTTTGGACCAATTCCACAAATGATCCGTGGG 146258 | ||||| ||| || || ||||| ||| | |||| ||||| Sbjct 12119 GCGATCTTGTCCTTCAGCGAGGCCCAATCCCAGA---GATCAGTGGG 12162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475497376394240