Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq254 105 6e-18 seq241 82.4 7e-11 >seq254 Length=118772 Score = 105 bits (116), Expect = 6e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | || || ||||| || || |||||||||||||| || |||||| Sbjct 32779 ATACCTCCACGAAGGCGCAGGACGAGATGTAGAGTGGATTCCTTTTGGATGTTGTAATCG 32838 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| ||| || | || || || ||| | ||||| || ||||||||||| Sbjct 32839 GAGAGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAAGCGCTGCTGGTCCGGA 32898 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || ||||| ||||| ||| |||| || | || | || ||||| ||||| Sbjct 32899 GGGATGCCCTCCTTATCCTGAATCTTTGACTTGA-CGTTGTCGATCGTATCGGATGACTC 32957 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGT 45316 || || || || | || |||||||| Sbjct 32958 AACCTCAAGGGTGATGGTCTTGCCGGT 32984 >seq241 Length=242151 Score = 82.4 bits (90), Expect = 7e-11 Identities = 128/181 (71%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA--TCGTCCAATT 45195 || |||||||| ||||| ||||| || || ||| ||| | | | || || | | Sbjct 46839 TGGAGCGTTGACTCCTTCTGGATGTTGTAGTCG--GACAGAGTGCGGCCGTCCTCGAGCT 46782 Query 45196 GTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTT 45255 | || || ||| | ||||| || ||||||||||| |||||||| || || || || || | Sbjct 46781 GCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCT 46722 Query 45256 TTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 | |||| || | ||||||||| ||||| || ||||| || | ||| ||||||| Sbjct 46721 TGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATCGTCTTGCCGG 46662 Query 45316 T 45316 | Sbjct 46661 T 46661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451999945576960