Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq20 187 3e-42 seq230 116 5e-21 seq367 98.7 1e-15 >seq20 Length=105358 Score = 187 bits (206), Expect = 3e-42 Identities = 566/862 (66%), Gaps = 13/862 (2%) Strand=Plus/Plus Query 116425 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 116484 || || |||| || || || ||||| || | |||||| | |||||||||| | Sbjct 12533 GGGAGCGCGAGCGAGGCGAGGTTACATACCGCTACCTCATCAGGAGCAGTGTACTCGACG 12592 Query 116485 ATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 116544 || || || || | || || || |||||| || | |||||||| || ||| | Sbjct 12593 ATCTCGGTGCAGAGGTTAGAGCTGCGAATGGTACCAAGATTCTTTTGGTTGCTCTTCCGG 12652 Query 116545 TTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 116604 || || ||||| ||||||||||| | || | || |||||||| || | || || || Sbjct 12653 TTGCAAGCATCTTTGTAGAGCATGAAAGGGTTACCAGTCTCCGTCTGAGCCTCAAGGATG 12712 Query 116605 GCCTTCCATACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTA-CTT 116663 || | ||| | | ||| | ||||| | | || || ||||| | Sbjct 12713 GCATACCAGAGCTTTTGGGCGCGAACAGTCTCCCGACCACGGTTGTCACGTTCGTAACGA 12772 Query 116664 TGTGTAGAGGGCCTCAAACTCTTCACCC-ACAGCCTCTGAGAGCCCTGGTGCCTTATCTG 116722 || |||||| |||| ||||| ||||| ||| | || | || || || || | | | Sbjct 12773 TG-GTAGAGCTCCTCGAACTCATCACCATACA-CGTCGGCAAGACCAGGGGCTTCGTTGG 12830 Query 116723 GACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCC 116782 | ||||| || | ||| | |||| ||||| ||| ||||||||||| |||||||| |||| Sbjct 12831 GGCAGAATAGCGTCCACTCACCATTCTCCTGAACGCGCTTCATGAAAAGGTCTGGAATCC 12890 Query 116783 AGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACT 116842 | || || ||||||| || || ||| |||| || | || || || || | | Sbjct 12891 ATAGTGCGTAGAAGAGGTCACGGGCACGAACTTCCTCTTTGCCATGGTTCTTGCGAAGAT 12950 Query 116843 CCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGC 116902 | | || | | || ||| || ||||| || |||||||| | |||| | || || Sbjct 12951 CAAGGAAACCGAAGACATCAGCATGCCATGGCTCCAGGTAGATGGCGAAGGCGCCAGGGC 13010 Query 116903 GACGA---CCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAA 116959 | ||| | || | ||||| | ||||| ||| | || |||||||| |||| Sbjct 13011 GCTTGTTGCCACCTTGATCAACATAACGAGCCGTGTTGTTGTAGACACGAAGCATGGGAA 13070 Query 116960 TGATACCATCAGATTGGCCATTTGTCCC-CCGAA-TACGAGACTTGTTGGCTCTGACATC 117017 ||| ||| | ||| ||||| || || |||| || ||| | |||| | || | Sbjct 13071 TGAGACCGTTCGATGTACCATTGGTGCCACCGATGTAAGAGCCAG--TGGCACGGATACG 13128 Query 117018 GTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACT 117077 ||| | || | ||||||||| || || ||| ||||| || || | |||| | Sbjct 13129 GTGAACGTTGAGACCAATACCGCCAGCGGTCTTGGAGATCAAGGCACAAGTCTTGAGTGT 13188 Query 117078 GCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTG 117137 | ||||||| ||||| || ||| |||| | |||||||||||||| ||||||||| Sbjct 13189 GTCGTAGATGCCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGACGACATTTG 13248 Query 117138 TGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATAC-CTTGGG 117196 || ||||||| || || ||||||||||| || | ||||| |||| ||| ||| | Sbjct 13249 AGGATTTGGTGTGCCCGCATTGAAGAGGGTAGGCGAAGCGTGTGTGAA-GTACTTTTGCG 13307 Query 117197 ACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGA 117256 |||| | ||||| ||||| | | |||| || || || || |||| | | Sbjct 13308 ACATGTAGTCGTAAGTCTCAATCGCCTTCTCGATGTTCTCTCCATGGATGCCGACAGCCA 13367 Query 117257 CCCGCATAAACATGTATTGGGG 117278 | ||||| ||||||| ||| || Sbjct 13368 CGCGCATCAACATGTGTTGTGG 13389 >seq230 Length=87271 Score = 116 bits (128), Expect = 5e-21 Identities = 301/454 (66%), Gaps = 10/454 (2%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| ||||| |||||||| |||||||| ||||| || | || ||| |||||||| Sbjct 45769 GTAGTCACCGACGCGCTTCTCAAAGAAGTTGGTCTTGCCCGCCAGAGAGATGTTCTCCAT 45710 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCA--AATTGTTGGCACCCCAATCTGTTTGAGGAGA 127348 || || || ||||| | | ||| | | |||||| ||| || || || Sbjct 45709 GAAGTCGAAGGGGTTGGTGGCGTTGTAGTACTTGTTGTTACC--AAGGGACAGCAGAAGG 45652 Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408 ||||| | || |||||||||||| |||| |||||||||| || | || Sbjct 45651 CGATCAGCCACAAACTCAATGTACTGGCACATGAGTGCAGAGTTCATGCCAAGCAGAGCG 45592 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 || ||||| || || || |||| ||||||| || | || || || | |||||| Sbjct 45591 CAGGGGAGAGCATCTGTGAGGAACTCCTTCTCGATCGCGACGGCCTCAGTGATGATGGCC 45532 Query 127469 TGAATAGTGTCCACCCCAGGTC---TATTGCGTAAAGTCTTGAAGAGTTCCACAGCAAAC 127525 || | | ||| | || | | ||| | | || || ||| || ||||| Sbjct 45531 TGGACGGCATCCTTACTGGGGCGTGTGTTGAGGAGAGAGAAGAGGAGG--CAG-GCAAAG 45475 Query 127526 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 127585 || ||| | |||||||| || ||||| || || || ||||| ||||| ||||| Sbjct 45474 TCAGTGTGCATGCCCTCGTCGCGAGAGATCAGCTCGTTTGAGAATGTGAGACCGGGCATC 45415 Query 127586 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 127645 || || ||||||||||||||||| || | || ||||| ||||||||| ||||| Sbjct 45414 AGGCCACGCTTCTTCAACCAGAAGATGGACGCGAACGAGCCGCTGAAGAAGATGCCCTCA 45355 Query 127646 ACACACGCGAACGCAAATAGACGCTCGGCAAAGG 127679 || ||||| || | ||||| | ||| |||| Sbjct 45354 ACGGCGGCGAATGCGACCAGACGGTTGGCGAAGG 45321 >seq367 Length=109793 Score = 98.7 bits (108), Expect = 1e-15 Identities = 166/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 12876 CCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGT-TGATTTTCACGGGCAACTTC 12934 |||| ||||||||||||||||||||| | ||| || ||| || | || || ||| | Sbjct 24034 CCGATGGCGTCAATTTCGTCAATGAAGATGATGCAGGGTGTGCTCTT-TCGCGCATTGGC 23976 Query 12935 AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG--CG 12992 || | || ||||| | | |||||||||||| ||||||||||| || || | | | Sbjct 23975 GAACAGGTCACGCACACGCGAGGCACCGACACCGACAAACATCTCTACGAATTCAGAACC 23916 Query 12993 GCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 13052 | | ||| | || ||| || ||| || || || || ||||| ||||||||| ||| Sbjct 23915 ACTG-ACACT-GAAGAATGGCACGCCAGACTCGCCGGCAGTGGCTTTGGCGAGGAGCGTC 23858 Query 13053 TTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACCA 13106 || || || || || || | ||||| || ||||| |||||| | |||||| Sbjct 23857 TTACCAGTACCGGGCGGGCCGGAGAGAATCGCTCCACGAGGGATCTTCGCACCA 23804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613502782748160