Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq230 127 3e-24 seq20 123 4e-23 >seq230 Length=87271 Score = 127 bits (140), Expect = 3e-24 Identities = 329/497 (66%), Gaps = 7/497 (1%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 |||||| || ||||||||||||||| ||| || || |||||||| |||| ||||| Sbjct 45754 CTTCTCAAAGAAGTTGGTCTTGCCCGCCAGAGAGATGTTCTCCATGAAGTCGAAGGGGTT 45695 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 | ||| ||| ||| || || | | ||| | | || |||||||| || Sbjct 45694 GGTGGCGTTGTAGTACTTGTTGTTACCAAGGGACAGCAGAAGGCGATCAGCCACAAACTC 45635 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 ||||| ||||| | || |||| || || ||||| |||||| || || | Sbjct 45634 AATGTACTGGCACATGAGTGCAGAGTTCATGCCAAGCAGAGCGCAGGGGAGAGCATCTGT 45575 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACA-CGTTCGTACC 159887 || ||||||||||| ||| |||| || || || | || | ||| | | | ||| Sbjct 45574 GAGGAACTCCTTCTCGATCGCGACGGCCTCAGTGATGATGGCCTGGACGGCATCCTTACT 45515 Query 159888 CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947 ||| || || || || |||||||| |||||||| ||||| |||| Sbjct 45514 GGGGCGTGTGT----TGAGGAGAGAGAAGAGGAGGCAGGCAAAGTCAGTGTGCATGCCCT 45459 Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007 |||| |||||||| | |||||| || | |||| || ||||| | |||||| || | Sbjct 45458 CGTCGCGAGAGATCAGCTCGTTTGAGAATGTGAGACCGGGCATCAGGCCACGCTTCTTCA 45399 Query 160008 GCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCA 160067 ||| || |||| ||| || | ||||| || ||||| ||||| ||||| || || || | Sbjct 45398 ACCAGAAGATGGACGCGAACGAGCCGCTGAAGAAGATGCCCTCAACGGCGGCGAATGCGA 45339 Query 160068 CGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGCCT 160127 | || | | | || | | ||| |||| | |||| | |||||| ||||||| Sbjct 45338 CCAGACGGTTGGCGAAGGTCGAGTTCTTGTCTGAGATCCATTTGAGGGCCCAGTCAGCCT 45279 Query 160128 TCTTTGCG-ATGCACGG 160143 || ||||| ||||| || Sbjct 45278 TC-TTGCGAATGCATGG 45263 >seq20 Length=105358 Score = 123 bits (136), Expect = 4e-23 Identities = 344/523 (66%), Gaps = 6/523 (1%) Strand=Plus/Plus Query 203885 AGATAGTACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGT 203944 ||||||||||| || ||||| || || || ||| ||| | ||||| |||| | Sbjct 11669 AGATAGTACATTCCAGTCTTCAGCCCAAGCTTCCAGCCGGCAAAATGCATCGAAGTGATC 11728 Query 203945 TTGCTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGC 204004 |||| || | | || || |||||||||||||| ||||| ||||||||||| | Sbjct 11729 TTGCCCATGGTCGGCTCCTTCATGTGAATGTTCAAGGACTGAGACTGGTCGATGAACGCA 11788 Query 204005 GCCCGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAAC 204064 | || || || ||||| | ||| ||||| |||||| ||||||||||| |||||| || Sbjct 11789 CCACGGTCGGCAGCCATCTGGATGATGGTGCGCTGCGAGATCTCCCACACTGTCTTGTAC 11848 Query 204065 A-CGTCTCTGGTGTGTTGAGGCACATCTTCCCA--CGTCCTGATCGAGCCGTTGTCGGCC 204121 | |||| | || | || ||| || || | | || || || ||| ||||| Sbjct 11849 AGAGTCT-TCGTCTCTTCAGG--GATGTTGGGAATCCTCTGAATGGAACCGCCATCGGCG 11905 Query 204122 ATCAGTCTCATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGG 204181 || | | || || | | ||| ||||| |||| | || || || || Sbjct 11906 ATGATACGGTTCTTCATGTTCTCAGACCACAGTCCCATGTCAACGAGATCTTTCAAGAGC 11965 Query 204182 TGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTG 204241 |||||||| || ||||| || |||| |||||| | || | | | | ||| ||| Sbjct 11966 CAGGGGTTGACGACTTGAAACTCGCCGGCCAGCACACGGCGAGAGTAGATGTTTGACGTG 12025 Query 204242 AATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGA 204301 | || ||||| |||||| || || | |||||||| || || || |||||||| Sbjct 12026 TAGGGCTCGAAGCACTCGTTATTCCCAAGAATCTGAGACGTAGATGCGGTCGGCATGGGT 12085 Query 204302 GCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAG 204361 || | | || || ||||| || |||| | | || | || |||||| |||| ||| Sbjct 12086 GCAACCAAAAGAGAATTGCGAACGCCGTGCTGTGCGATCTTGTCCTTCAGCGAGGCCCAA 12145 Query 204362 TCGTGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAA 204404 || | || ||||| | ||| ||||| |||| |||||| Sbjct 12146 TCCCAGAGATCAGTGGGTGTGACGTTCCACAGGTCGTACTGAA 12188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795149474882560