Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq254 129 1e-24 seq241 118 2e-21 seq275 105 2e-17 >seq254 Length=118772 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||||||||| |||||||| |||| ||||||||| | | ||| | || ||| Sbjct 32569 AGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTACGGCCGTCT 32628 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || || ||||| |||||||| ||||| ||| || || ||| Sbjct 32629 TCGAGCTGCTTGCCAGCAAAAATGAGTCGCTGCTGATCCGGGGGAATACCCTCCTTGTCC 32688 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||||||| || | ||||||| | || || ||||| ||||| ||| Sbjct 32689 TGAATCTTCGACTTCACGTTGTCAATCGTGTCTGAAGACTCAACCTCCAATGTGATAGTC 32748 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || || || Sbjct 32749 TTGCCAGTGAGTGTCTTGACGAAGATCTG 32777 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || ||||||||||| || | |||||||| | || | || ||| Sbjct 32341 AGCACCAAGTGCAGTGTCGACTCCTTCTGAATATTGTAGTCGCTGAGCGTTCGGCCGTCT 32400 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| || ||||||||||||||||||||||| || || || || || Sbjct 32401 TCCAACTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGCGGGATACCCTCCTTGTCT 32460 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| |||| ||| || | | ||| || ||||| ||||| ||| Sbjct 32461 TGGATCTTCGATTTCACGTTGTCGATGGTATCGCTCGATTCGACTTCCAATGTGATAGTC 32520 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| || ||||| ||||| Sbjct 32521 TTGCCAGTAAGAGTCTTGACAAAGATTTG 32549 Score = 116 bits (128), Expect = 9e-21 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | |||||| || || ||||| || |||||||||| |||||| || | | || Sbjct 32788 CGAAGGCGCAGGACGAGATGTAGAGTGGATTCCTTTTGGATGTTGTAATCGGAGAGGGTA 32847 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| |||||||| || | ||||||||||||||| || || Sbjct 32848 CGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAAGCGCTGCTGGTCCGGAGGGATGCCC 32907 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || |||||||||||| ||| ||| |||| || || | || || || || | Sbjct 32908 TCCTTATCCTGAATCTTTGACTTGACGTTGTCGATCGTATCGGATGACTCAACCTCAAGG 32967 Query 199589 GTGATCGTCTTACCCGTGA 199607 ||||| ||||| || |||| Sbjct 32968 GTGATGGTCTTGCCGGTGA 32986 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| || ||||| || |||||||| |||| ||||||||| | | || Sbjct 33071 CGAAGGCGGAGGACGAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTG 33130 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| ||||||||||| || ||||||||||||||| || || Sbjct 33131 CGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGAGGGATACCC 33190 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || |||| |||||| | | || || || | Sbjct 33191 TCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGG 33250 Query 199589 GTGATCGTCTTACCCGT 199605 ||||| ||||| || || Sbjct 33251 GTGATGGTCTTGCCGGT 33267 >seq241 Length=242151 Score = 118 bits (130), Expect = 2e-21 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | |||||| || |||||||| |||| ||||||||| | || ||| | || || Sbjct 46848 AGGACCAAGTGGAGCGTTGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCGTCC 46789 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| ||||||||||| | |||||||||||||| ||| || || ||| Sbjct 46788 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 46729 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| |||||| | | || || || | ||||||||| Sbjct 46728 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATCGTC 46669 Query 199598 TTACCCGTGA 199607 || || |||| Sbjct 46668 TTGCCGGTGA 46659 >seq275 Length=365033 Score = 105 bits (116), Expect = 2e-17 Identities = 84/101 (83%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| || ||||||||||| |||| ||||||||| | | || | ||||| Sbjct 273849 AGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 273790 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 || |||||||| ||||||||||||||||||||||||||||| Sbjct 273789 TCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGG 273749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178912899558592