Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq241 141 1e-28 seq254 140 4e-28 seq275 98.7 1e-15 >seq241 Length=242151 Score = 141 bits (156), Expect = 1e-28 Identities = 132/168 (79%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| |||||||| |||| |||||||||||||||||||| Sbjct 46828 CTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 46769 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||||||||||||||| | || | || |||||||||| |||||| ||||| | Sbjct 46768 GATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 46709 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569 | | |||||| ||| ||||| || | ||||| || ||||| || Sbjct 46708 GTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATCGTCTTGCCGGT 46661 >seq254 Length=118772 Score = 140 bits (154), Expect = 4e-28 Identities = 143/187 (76%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | |||| |||||| ||||| ||||||||||| || ||||| | || || Sbjct 33083 ACGAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCCTCA 33142 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||||||||| |||| |||||||||||| | || | | |||||||||| | Sbjct 33143 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGG 33202 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| |||||| | | | |||||| ||| ||||| || | |||||||| ||| Sbjct 33203 ATCTTGCTCTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATGGTCTTG 33262 Query 46565 CCCGTCA 46571 || |||| Sbjct 33263 CCGGTCA 33269 Score = 125 bits (138), Expect = 8e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| |||| ||| |||||| || |||||||||||| || || || |||| || Sbjct 32343 CACCAAGTGCAGTGTCGACTCCTTCTGAATATTGTAGTCGCTGAGCGTTCGGCCGTCTTC 32402 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 | |||||| || ||||| || | ||||||||||| | ||| | | ||||||||| Sbjct 32403 CAACTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGCGGGATACCCTCCTTGTCTTG 32462 Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTT 46562 ||||||| || | ||| | | | || ||||||||||| || |||| ||||| || | Sbjct 32463 GATCTTCGATTTCA-CGTTGTCGATGGTATCGCTCGATTCGACTTCCAATGTGATAGTCT 32521 Query 46563 TGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || || || || |||||||||||||| Sbjct 32522 TGCCAGTAAGAGTCTTGACAAAGATTTGCAT 32552 Score = 116 bits (128), Expect = 4e-21 Identities = 128/168 (76%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| ||||| ||||| || || || | || |||||||||||||||||||| Sbjct 32818 TCCTTTTGGATGTTGTAATCGGAGAGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAA 32877 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||||||||||||||| | || | || |||||| ||| ||||| ||||| ||| Sbjct 32878 ATCAAGCGCTGCTGGTCCGGAGGGATGCCCTCCTTATCCTGAATCTTTGACTTGA-CGTT 32936 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569 | | | ||| ||| || || || || | |||||||| ||||| || Sbjct 32937 GTCGATCGTATCGGATGACTCAACCTCAAGGGTGATGGTCTTGCCGGT 32984 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || ||||| || |||| |||||||||||||| || || Sbjct 32589 CTCCTTCTGGATGTTGTAGTCTGAGAGAGTACGGCCGTCTTCGAGCTGCTTGCCAGCAAA 32648 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||| || | || | | |||||||||| |||||| ||| | ||| Sbjct 32649 AATGAGTCGCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAATCTTCGACTTCA-CGT 32707 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| || || || |||| ||||| || ||||| || || || || | Sbjct 32708 TGTCAATCGTGTCTGAAGACTCAACCTCCAATGTGATAGTCTTGCCAGTGAGTGTCTTGA 32767 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 32768 CGAAGATCTGCAT 32780 >seq275 Length=365033 Score = 98.7 bits (108), Expect = 1e-15 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| | || |||||||||||||||||||| Sbjct 273829 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 273770 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 || | ||||||||||| | || | || ||||||||| Sbjct 273769 GATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 273731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565234330283520