Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq257 316 3e-81 seq96 183 4e-41 seq262 107 2e-18 >seq257 Length=526535 Score = 316 bits (350), Expect = 3e-81 Identities = 490/694 (71%), Gaps = 8/694 (1%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||||||||||||||||||||| ||||| || || |||| ||||| || |||||||| Sbjct 133577 ATCGAAATCTTCACCACCCAAGTGAGTATCTCCGGCAGTCGACTTGACCTCGAAGATACC 133518 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | |||||| | | | || ||||| || ||||||||||||| ||| || ||||| || Sbjct 133517 CTCCTCAATGGTCAGGAGGGAGACATCGAAGGTACCACCACCCAAGTCGAAGATGAGGAC 133458 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 ||| ||| | | | ||||| || |||||||| ||||| || || || || || || Sbjct 133457 GTTGCGCTCGCCAACAGTCTTCTTGTCAAGACCGTAGGCGATGGCAGCGGCGGTGGGCTC 133398 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || || ||||| || ||| || ||||| || | ||||| || || ||||| || Sbjct 133397 GTTGATGATACGGAGGACGTTGAGACCAGCGATGAGACCAGCATCCTTGGTAGCTTGACG 133338 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || || ||||| |||||||| ||||| || ||||| |||| |||| | ||||| Sbjct 133337 CTGGGAGTCGTTGAAGTAGGCGGGGACGGTGACGACAGCGTTGTTGACGGTGCCTCCGAG 133278 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGC 7815 || || || || | || |||| ||||| | ||||| ||||| ||||| |||| | Sbjct 133277 GTATGACTCGGCAGTTTCCCTCATCTTGGTCAAGACCATGGATGAGATCTCCTCAGGTGT 133218 Query 7816 AAACTGTTTCGT-TTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGG 7874 || ||| | || || || || || || || | || | || || |||| | | Sbjct 133217 GAA-TGTCTTGTCCTCGCCCTTGAACTCGACCTGGATGACAGGCTT-GCCGC--CCTTGT 133162 Query 7875 GGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTC 7934 ||| ||||| | | | | ||||| ||| | || |||| ||| | ||||| | Sbjct 133161 CGATGACCTTGAAGGGGAAGTGCTTCATGTCGGCCTGCACCTCAGCGTCGGCGAACTTGC 133102 Query 7935 TTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCT 7994 ||||| || |||||||| || || || ||||| ||||||||||||| ||||||| Sbjct 133101 GGCCGATGAGGCGCTTTGCGTCGAAGACGGTGTTGGTGGGGTTCATGGCGACCTGGTTCT 133042 Query 7995 TCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCG 8054 |||||| || ||||| || || || || || || || |||||| |||| || || | Sbjct 133041 TCGCCGAATCACCGATGAGGCGCTCGGTA---TCTGTGAAAGCGACGAACGAAGGTGTTG 132985 Query 8055 TTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGC 8114 | || || || |||||||| ||||| ||||| | |||||| | | ||| || |||| Sbjct 132984 TGCGGTTACCCTGGTCGTTGGCAATGATTTCGATGCGGTCATCTCTGAAGATACCCACGC 132925 Query 8115 ACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 |||| ||||| || || | ||| |||||||| || Sbjct 132924 ACGAGTACGTGGTACCCAGATCGATACCGATCGC 132891 Score = 141 bits (156), Expect = 1e-28 Identities = 254/371 (68%), Gaps = 0/371 (0%) Strand=Plus/Minus Query 7022 ATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTC 7081 ||||| || ||||| | || ||||| ||||| |||||||||||||| || | || || Sbjct 134063 ATGGCAGCCTGGACGGCAGCACCGTAGGCGACGGCCTCATCGGGGTTGATGGACTTGTTG 134004 Query 7082 AGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGAT 7141 | || || ||||| || | || || | ||| | || | || ||||| || || || Sbjct 134003 GGCTCCTTGCCGTTGAAGAAGTCGGAGACCATCTTCTGGACCTTGGGGATACGGGTGGAG 133944 Query 7142 CCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTT 7201 ||||||||||| ||||| || | || || || |||||||| | ||| || || Sbjct 133943 CCACCGACCAAGACGATCTCGTGGACGGAGGACTTGTCGATCTTAGCGTCGCGCAGGACA 133884 Query 7202 TTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCA 7261 ||||| || ||||| ||||| | ||| |||| ||||| || || ||| Sbjct 133883 CGCTCGACGGGCTCCATGGTGGAGCGGAAGAGATCCTGGCACAACTCCTCGAAGCGAGCA 133824 Query 7262 CGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTT 7321 || || || || || ||||| || | || ||||| | || || || || |||| || Sbjct 133823 CGAGTGATCGAGGTGTAGAAGTCGATACCCTCGTACAGGGAGTCGATCTCGATGGAGGTC 133764 Query 7322 TGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGG 7381 || || | ||||| | || ||||| || ||||| || || || || | |||||| ||| Sbjct 133763 TGGGCGGAGGAAGAGAGGGTACGCTTGGCCCGCTCGCAGGCAGTGCGGAGACGACGGAGG 133704 Query 7382 GCACGCGGGTT 7392 ||||| | ||| Sbjct 133703 GCACGGGCGTT 133693 >seq96 Length=114357 Score = 183 bits (202), Expect = 4e-41 Identities = 356/517 (69%), Gaps = 13/517 (3%) Strand=Plus/Plus Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306 ||||| ||||| |||||||| ||| | | ||| || |||||||| | | ||| || Sbjct 30051 TCCTCGAAACGAGCACGGGTGATGTTGGCGTTGAAGTCCTCGCCGTCGAAAAGCGAGTCG 30110 Query 7307 ATTTCAATGGTTGTTTG--TGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCG 7364 || |||| || || || || ||| | ||| | || ||||| || ||||| || || | Sbjct 30111 ATCTCAACTGTGGTCTGGGTGGCGTTGGAGAGA--GTACGCTTGGCACGCTCGCAAGCGG 30168 Query 7365 TTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTT-TA 7423 | || | |||||| || || || | | |||| || || ||||| || | | || | Sbjct 30169 TCCGGAGACGACGCAGAGCGCGGGCATCACCGCTGATGTCCTTCTTG-GTCTTCTTTGTG 30227 Query 7424 AACTCTT-CAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGT 7482 ||||||| | | || ||| | | || ||| ||||| |||| ||||||||||| || Sbjct 30228 AACTCTTTCTTAAAATGGTCCA-GAAGGTTCGTGTCGAAGTCTTGGCCACCCAAGTGAGT 30286 Query 7483 ATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATC 7542 ||| || || || || ||||| |||| ||| || | |||| | || || ||||| Sbjct 30287 ATCTCCAGCAGTGGCCTTGACGGTGAAGACACCGCCCTGGATGTGCAGCAGAGACACATC 30346 Query 7543 AAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGT----CGTCTTTGTTCT 7598 || ||||||||||| || || | ||||| || ||| | || | || |||| Sbjct 30347 GAAGGTACCACCACCAAGATCGTAGATGAGGACATTCCTCTCCTTCTCCGACTTTCCGGA 30406 Query 7599 TATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCA 7658 | |||||||||| ||||| || || || || || || || || ||||| ||| ||| | Sbjct 30407 -ACCGAGACCGTAAGCGATGGCAGCGGCGGTAGGCTCGTTGATGATACGGAGAACGTTGA 30465 Query 7659 GGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCG 7718 |||||||||| | | || || || || ||||| || || ||||| |||||||| | Sbjct 30466 GGCCAGCAATGGCACCGGCGTCCTTTGTGGCTTGACGCTGGTTGTCGTTGAAGTAGGCGG 30525 Query 7719 GGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 |||| || | ||| || | | ||| ||| | ||||| Sbjct 30526 GGACAGTGATGACGGCCTTCTCGACCTTCATGCCGAG 30562 >seq262 Length=408809 Score = 107 bits (118), Expect = 2e-18 Identities = 240/362 (66%), Gaps = 15/362 (4%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| |||||||| | || || || || ||||||| | ||| || || | ||| Sbjct 201818 TCGAAATCCTCACCACCGAGATGAGTGTCACCAGCGGTCGACTGGACCTCGAAAACACCC 201877 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTA-- 7574 | |||| | | | || ||||| || ||||||||||| || || | | ||| | Sbjct 201878 TCCTCAAGAGTGAGGATGGACACATCGAAAGTACCACCACCAAGATCGTAGACGAGAACC 201937 Query 7575 -------CGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCC 7627 | ||| | |||||| | |||||| || || || || | ||| ||||| Sbjct 201938 TGGCGCTCCTTCTTGTCGTCGACCTTGTTC------AGGCCATAGGCCAAAGCTGCCGCG 201991 Query 7628 GTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTC 7687 || || || || | | ||| ||| ||| || || || || || | || || || || Sbjct 201992 GTAGGCTCGTTGACGACACGGAGAACGTTGAGACCGGCGATGGTACCAGCGTCCTTGGTG 202051 Query 7688 GCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTC 7747 || || || | ||||| |||||||| ||||| || ||||| |||| | |||| | Sbjct 202052 GCGGCACGCTGGGCGTCGTTGAAGTAGGCGGGGACGGTGACGACGGCGTTCTTGACGGGC 202111 Query 7748 TTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCT 7807 | |||||||| || || || || ||||| || ||||||||| | || ||||| Sbjct 202112 TCGCCGAGATAGCTCTCAGCAATCTCCTTCATCTTTCCAAGAACCATGGCCGAGATCTCC 202171 Query 7808 TC 7809 || Sbjct 202172 TC 202173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635128227043840