Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq20 264 1e-65 seq230 111 2e-19 seq367 91.5 2e-13 >seq20 Length=105358 Score = 264 bits (292), Expect = 1e-65 Identities = 1124/1752 (64%), Gaps = 39/1752 (2%) Strand=Plus/Minus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 |||||| ||||||| ||||| || || |||| |||||||| || | || || | Sbjct 13390 CCCACAACACATGTTGATGCGCGTGGCTGTCGGCATCCATGGAGAGAACATCGAGAAGGC 13331 Query 111671 TTTGGAGACATACGACAAGATGTCCCGTG-GTATGTTCATCCACGCAACACCAACCCTCT 111729 | ||||| |||||| | ||||| | ||| |||| ||||| | || ||||||| Sbjct 13330 GATTGAGACTTACGACTACATGTCGCAAAAGTAC-TTCACACACGCTTCGCCTACCCTCT 13272 Query 111730 TCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGG 111789 |||| || || ||||||| || |||||||| || ||||| || | | ||||||| Sbjct 13271 TCAATGCGGGCACACCAAATCCTCAAATGTCGTCCTGCTTCCTCATCGACATGAAGGAGG 13212 Query 111790 ATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTG 111849 | || ||||||| |||| ||| |||| |||||| ||||| ||| |||| Sbjct 13211 ACAGCATTGATGGCATCTACGACACACTCAAGACTTGTGCCTTGATCTCCAAGACCGCTG 13152 Query 111850 GTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAA 111909 | ||||| || | || | || | || | |||| ||| || | || || | Sbjct 13151 GCGGTATTGGTCTCAACGTTCACCGTATCCGTGCCACTGGCTCTTACATCGGTGGCACCA 13092 Query 111910 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 111969 ||||| ||| | ||| | ||||| |||||||| || | ||| ||| || || |||| Sbjct 13091 ATGGTACATCGAACGGTCTCATTCCCATGCTTCGTGTCTACAACAACACGGCTCGTTATG 13032 Query 111970 TAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACG 112026 | | |||| ||| ||| || | |||| |||| || ||||||||||| | Sbjct 13031 TTGATCAAGGTGGCAACAAGCGCCCTGGCGCCTTCGCCATCTACCTGGAGCCATGGCATG 12972 Query 112027 CGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCC 112086 | ||| || | | |||||||| | || ||||| || | ||||| | || || Sbjct 12971 CTGATGTCTTCGGTTTCCTTGATCTTCGCAAGAACCATGGCAAAGAGGAAGTTCGTGCCC 12912 Query 112087 GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTG 112146 | || ||||||| ||| || ||||||||||| || ||||||||| | ||| |||||| || Sbjct 12911 GTGACCTCTTCTACGCACTATGGATTCCAGACCTTTTCATGAAGCGCGTTCAGGAGAATG 12852 Query 112147 GCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTG---GGTG 112203 | | ||| | || || || || || | || || ||||| |||| |||| |||| Sbjct 12851 GTGAGTGGACGCTATTCTGCCCCAACGAAGCCCCTGGTCTTGCCGA---CGTGTATGGTG 12795 Query 112204 AGGAGTTTGAAGCCCTCTACACAAAG-TACGA--GGAAGAA----AGTCGGGCGACTGCG 112256 | ||||| || | |||||| || | ||||| | | || |||||| ||||| Sbjct 12794 ATGAGTTCGAGGAGCTCTAC-CATCGTTACGAACGTGACAACCGTGGTCGGGAGACTG-T 12737 Query 112257 ACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 112316 || ||| || | ||| | || || || || |||| || |||||||||| Sbjct 12736 TCGCGCCCAAAAGC-----TCTGGTATGCCATCCTTGAGGCTCAGACGGAGACTGGTAAC 12682 Query 112317 CCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 112376 || | ||||| |||||||| || || |||| ||||| || ||||||||| | ||| Sbjct 12681 CCTTTCATGCTCTACAAAGATGCTTGCAACCGGAAGAGCAACCAAAAGAATCTTGGTACC 12622 Query 112377 ATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCT 112436 || || || |||||||| || || ||| | || | || | |||||| || Sbjct 12621 ATTCGCAGCTCTAACCTCTGCACCGAGATCGTCGAGTACACTGCTCCTGATGAGGTAGCG 12562 Query 112437 GTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACA-TT 112495 || ||||||||||| || |||| |||||| || ||||| | | | | | | || Sbjct 12561 GTATGTAACCTCGCCTCGCTCGCGCTCCCCTCGTTCGTGGA-CTATAAGCGCGGGGAGTT 12503 Query 112496 TGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTAT 112555 ||| | | |||||||||||||| || || ||| || ||| | |||| | || Sbjct 12502 TGACTTCAACAAACTCCACGAAGTCACCCAAGTTGTTACCCGCAACTTGAACAAGATCAT 12443 Query 112556 TGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAAT 112615 || || ||||| || ||| || ||| ||| | | ||| | || || Sbjct 12442 CGAAGTCAACCACTACCCAGTAGAGGAAGCACGTCGCAGCAATTTCCGTCACAGACCTAT 12383 Query 112616 TGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTC 112675 || |||||||| || |||||||| |||| ||| | ||| | || || || Sbjct 12382 CGGGCTCGGTGTTCAGGGTCTCGCTGATGCCTTCCTGGCACTACGCTTGCCCTTCGAGTC 12323 Query 112676 CGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGA 112735 ||| || ||| | |||| | || || ||||| || || ||||| || || Sbjct 12322 GCCCGAGGCCAAGAAGCTCAACATCCAGATCTTCGAGACCATCTACCACGCGGCCCTCAC 12263 Query 112736 GGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGC 112795 | || || | || ||| || || || | || | || |||||||| Sbjct 12262 CTCATCTTGCGACATTGCTAAGGAGCTGGGCCCTTACGCGACATACGAAGGTTCTCCTAT 12203 Query 112796 TTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT--TCACTACGAC 112853 || ||||| |||||| | || ||| |||| || | ||| | || || || || Sbjct 12202 CTCCCAAGGCCAGCTTCAGTACGACCTGT-GGAACGTCACACCCA-CTGATCTCTGGGAT 12145 Query 112854 TGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCA 112913 |||| | | || ||||| ||| || | || |||| || ||||||| | ||| Sbjct 12144 TGGGCCTCGCTGAAGGACAAGATCGCACAGCACGGCGTTCGCAATTCTCTTTTGGTTGCA 12085 Query 112914 CCAATGCCAACAGCCTCCACCGCACA-AATCTTGGGTAATAATGAATGCTTTGAACCCTA 112972 || ||||| || || || || | || | ||||||| ||||| || ||||| || ||||| Sbjct 12084 CCCATGCCGACCGCATCTACGTCTCAGATTCTTGGG-AATAACGAGTGCTTCGAGCCCTA 12026 Query 112973 CACGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGC 113031 |||| | |||||||| ||| | | || || || |||||| | |||||| Sbjct 12025 CACGTCAAACATCTACTCT-CGCCGTGTGCTGGCCGGCGAGTTTCAAGTCGTCAACCCCT 11967 Query 113032 ATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGG 113091 ||| || | || ||| || || || || ||||| || | |||||| | | || Sbjct 11966 GGCTCTTGAAAGATCTCGTTGACATGGGACTGTGGTCTGAGAACATGAAGAACCGTATCA 11907 Query 113092 TGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGTTGT 113151 | | || ||||||||||| | ||| | || || || || | |||| ||| Sbjct 11906 TCGCCGATGGCGGTTCCATTCAGAGGATTCCCAACATCCCTGAAGAGACGAAGACTCTGT 11847 Query 113152 ACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTC 113211 || ||||| ||||| ||| | | |||| | ||||| || || |||||| Sbjct 11846 ACAAGACAGTGTGGGAGATCTCGCAGCGCACCATCATCCAGATGGCTGCCGACCGTGGTG 11787 Query 113212 GCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCCAACGATGTCCAA 113269 ||||| || | |||| ||| |||| | |||| | || || ||| ||| Sbjct 11786 CGTTCATCGACC--AGTCTCAGTCCTTGAACATTCACATGAAGGAGCCGACCATGGGCAA 11729 Query 113270 GCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACCT 113329 | || |||| ||||| | | | |||||| || || || || || ||||| || || Sbjct 11728 GATCACTTCGATGCATTTTGCCGGCTGGAAGCTTGGGCTGAAGACTGGAATGTACTATCT 11669 Query 113330 CCGATCTAAGGC 113341 ||| ||| ||| Sbjct 11668 CCGCACTATGGC 11657 >seq230 Length=87271 Score = 111 bits (122), Expect = 2e-19 Identities = 345/523 (66%), Gaps = 22/523 (4%) Strand=Plus/Plus Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGG-TTTGATACAAAGTC 102166 ||||||||||| |||| ||||| || || ||||| | || ||| | | | |||| | Sbjct 45257 ACAGTTCCATGCATTCGCAAGAAGGCTGACTGGGCCCTCAAATGGATCTCAGACAAGAAC 45316 Query 102167 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 102226 || |||| || | || || ||||||| || |||||||| ||||||||| || Sbjct 45317 TCG-ACCTTCGCCAACCGTCTGGTCGCATTCGCCGCCGTTGAGGGCATCTTCTTCAGCGG 45375 Query 102227 TTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 102285 || ||| ||| | || | ||| | |||||||| || || ||||| |||||| |||| Sbjct 45376 CTCGTTC-GCGTCCATCTTCTGGTTGAAGAAGCGTGGCCTGATGCCCGGTCTCACATTCT 45434 Query 102286 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTTTTCA 102345 | |||||||| |||||||| |||||||| | ||| || ||||| || || || Sbjct 45435 CAAACGAGCTGATCTCTCGCGACGAGGGCATGCACACTGACTTTGC-CTG--CCTCCTC- 45490 Query 102346 AATTATTGCGTATTAAACCAACG-------ACTGAGACTATTCATTCTATTGTTAAGGAA 102398 || | | | | ||| ||| | || | | || | || | | || Sbjct 45491 --TTCTCTC-TCCTCAACACACGCCCCAGTAAGGATGCCGTCCAGGCCATCATCACTGAG 45547 Query 102399 GCCGTTGAGATTGAGAAGGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATG 102458 ||||| | ||| ||||||| ||| | ||||| || || |||||||| | || ||| Sbjct 45548 GCCGTCGCGATCGAGAAGGAGTTCCTCACAGATGCTCTCCCCTGCGCTCTGCTTGGCATG 45607 Query 102459 AATTCTGAAAAGATGTCCGAATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATC 102518 || |||| | |||| | | || ||||||| ||| ||||| | | || | | Sbjct 45608 AACTCTGCACTCATGTGCCAGTACATTGAGTTTGTGGCTGATCGCCTTCTGCTG--TCCC 45665 Query 102519 GGGGTGCCTCCAATT--TGGAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCC 102576 ||| | ||| | | ||| ||| || || || ||||||||||||||||| | Sbjct 45666 TTGGTAACAACAAGTACTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCTC 45725 Query 102577 TCGACGGGAAGACAAACTTCTTCGAAAAGAGGGTTGGGGACTA 102619 | | || ||||| |||||||| || ||| | || || ||||| Sbjct 45726 TGGCGGGCAAGACCAACTTCTTTGAGAAGCGCGTCGGTGACTA 45768 >seq367 Length=109793 Score = 91.5 bits (100), Expect = 2e-13 Identities = 166/236 (70%), Gaps = 8/236 (3%) Strand=Plus/Minus Query 16058 TCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGT-TGAT-TTTCGCGAGCGACT 16115 ||| | ||| ||||| || |||||||||| |||||| ||| || | ||||||| | Sbjct 24035 TCCGATGGCGTCAATTTCGTCAATGAAGATGATGCAGGGTGTGCTCTTTCGCG--CATTG 23978 Query 16116 TCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG-- 16173 | || || || || |||||| ||| || ||||| ||||||||||| || || | | Sbjct 23977 GCGAACAGGTCACGCACACGCGAGGCACCGACACCGACAAACATCTCTACGAATTCAGAA 23918 Query 16174 CGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 16233 | | | ||| | || ||| || || ||| || || ||| ||||| |||||| || | Sbjct 23917 CCACTG-ACACT-GAAGAATGGCACGCCAGACTCGCCGGCAGTGGCTTTGGCGAGGAGCG 23860 Query 16234 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA 16289 ||||||| ||||| ||| || | ||| | || || || || ||||| || ||| Sbjct 23859 TCTTACCAGTACCGGGCGGGCCGGAGAGAATCGCTCCACGAGGGATCTTCGCACCA 23804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620737930654720