Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq230 114 2e-20 seq20 105 8e-18 seq256 87.8 2e-12 >seq230 Length=87271 Score = 114 bits (126), Expect = 2e-20 Identities = 329/495 (66%), Gaps = 11/495 (2%) Strand=Plus/Minus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 |||||||| || | ||| || ||||| || ||||| || | || |||||||| ||||| Sbjct 45768 TAGTCACCGACGCGCTTCTCAAAGAAGTTGGTCTTGCCCGCCAGAGAGATGTTCTCCATG 45709 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAG-ATTGGTGGTTGACCAACTTGTTTCAGAAGACG 119326 ||||| || || || ||| ||| || | | || ||| ||||| |||||| || Sbjct 45708 AAGTCGAAGGGGTTGGTGGCGTTGTAGTACTTGTTGTT-ACCAAGGGACAGCAGAAGGCG 45650 Query 119327 ATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTACA 119386 ||| | ||| |||| || || | | |||| | | || ||||| || | ||| || Sbjct 45649 ATCAGCCACAAACTCAATGTACTGGCACATGAGTGCAGAGTTCATGCCAAGCAGAGCGCA 45590 Query 119387 CGGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAGTG 119446 ||||||||||| || ||| | |||||||||| | || || || | | ||||| || Sbjct 45589 GGGGAGAGCATCTGTGAGGAACTCCTTCTCGATCGCGACGGCCTCAGTGATGATGGCCTG 45530 Query 119447 AATAG-TTTCTGTCGATGGTTTGTTTCTCAAGAGTTTAAACAACTCTACGGCAAATTCTT 119505 | | | || | || ||| | | | ||| || | |||||| || Sbjct 45529 GACGGCATCCTTACTGGGGCGTGTGT-TGAGGAGAGAGAAGAGGAGGCAGGCAAAGTCAG 45471 Query 119506 GATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTC 119565 || | || || || |||||||| ||||| || ||| || || ||||| || | Sbjct 45470 TGTGCATGCCCTCGTCGCGAGAGATCAGCTCGTTTGAGAATGTGAGACCGGGCATCAGGC 45411 Query 119566 CTCTTTTCTTTAGCCAAAAGATGGCACAAAAAC-TTCCAGAAAAGAAGATGCCCTCCACA 119624 | | ||||| | ||| ||||||| || ||| || |||||||||||||| || Sbjct 45410 CACGCTTCTTCAACCAGAAGATGG-ACGCGAACGAGCCGCTGAAGAAGATGCCCTCAACG 45352 Query 119625 CAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC---GAACCACTTGAG 119680 |||||| |||| ||||| | || ||||||||| |||||| || ||| ||||| Sbjct 45351 GCGGCGAATGCGACCAGACGGTTGGC-GAAGGTCGAGTTCTTGTCTGAGATCCATTTGAG 45293 Query 119681 AGCCCAGTTGGCCTT 119695 ||||||| ||||| Sbjct 45292 GGCCCAGTCAGCCTT 45278 >seq20 Length=105358 Score = 105 bits (116), Expect = 8e-18 Identities = 288/437 (66%), Gaps = 12/437 (3%) Strand=Plus/Plus Query 109399 GCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGC 109458 ||| | | ||| ||||| ||||| || || || || ||| |||||| || | |||| Sbjct 11657 GCCATAGTGCGGAGATAGTACATTCCAGTCTTCAGCCCAAGCTTCCAGCCGGCAAAATGC 11716 Query 109459 ATTGAAGAGAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGA 109518 || |||| || ||| | ||||| || ||| | ||||| ||||||||||| Sbjct 11717 ATCGAAGTGATCTTGCCCATGGTCGGCTCCTTCATGTGAATGTTCAAGGACTGAGACTGG 11776 Query 109519 TCGATGAATCGACCACGATCAGCCGCCATGTCGATGA---TACACTTTTGGCTA-ATTTC 109574 |||||||| |||||| || || ||||| | ||||| | | || || | || || Sbjct 11777 TCGATGAACGCACCACGGTCGGCAGCCATCTGGATGATGGTGCGCT----GCGAGATCTC 11832 Query 109575 CCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGA 109634 ||| || |||||||||| | |||| | || || || |||| || | ||||| || Sbjct 11833 CCACACTGTCTTGTACAGAGTCTTCGTCTCTTCAGGGATGTTGGGAATCCTCTGAATGGA 11892 Query 109635 GCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAG 109694 || ||| | | || | | |||||| | | ||||| || || | | ||| Sbjct 11893 ACCGCCATCGGCGATGATACGGTTCTTCATGTTCTCAGACCACAGTCCCATGTCAACGAG 11952 Query 109695 ATCGTCAACAAGATGC--TTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGG 109752 ||| | ||||| | |||||| || ||| || || || || || || | Sbjct 11953 ATCTT--TCAAGAGCCAGGGGTTGACGACTTGAAACTCGCCGGCCAGCACACGGCGAGAG 12010 Query 109753 TAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAA 109812 |||||||| | ||||||||| ||||| ||||| || || || || || || | || || Sbjct 12011 TAGATGTTTGACGTGTAGGGCTCGAAGCACTCGTTATTCCCAAGAATCTGAGACGTAGAT 12070 Query 109813 GCTGTGGGCATGGGAGC 109829 || || |||||||| || Sbjct 12071 GCGGTCGGCATGGGTGC 12087 >seq256 Length=102407 Score = 87.8 bits (96), Expect = 2e-12 Identities = 226/341 (66%), Gaps = 14/341 (4%) Strand=Plus/Plus Query 168250 AGACCCTTGATATGGCTTCCATCATTATCTGCGTCTGTCATGATCATGAGACGACCATAA 168309 || |||||||||||||| ||||| | |||| || ||||||||||||||| |||||||| Sbjct 85827 AGTCCCTTGATATGGCTACCATCGTGATCTTGATCCGTCATGATCATGAGATGACCATAA 85886 Query 168310 CGAAGTTC------GGAAACATCTTTGTACTCCTTTCCTTGT--TGAAGTCCCAAAATTT 168361 || ||| | | | | ||||||||||| ||||| ||||| |||| | | Sbjct 85887 CGGAGTCCCTTCATGTCAGCCATATTGTACTCCTT--CTTGTGCTGAAGACCCATGAACT 85944 Query 168362 TCTTGAGATCATTGAACTCCTGATTAGATGTCAACTGTGCCACCGATGAGTCCCTCACGT 168421 |||||| | | || |||||||| | | ||| | || | | ||| | |||| Sbjct 85945 TCTTGATGTTTTGGATTTCCTGATTCTTCATGATCTGATCAACAGTAGCGTCTCGAACGT 86004 Query 168422 TTTTACACTTACCACGGAGTGGAAATACCCCATAATGATCTCTACCCACGACGGAGAGAC 168481 | ||||||||||| ||||| || || | |||| | ||||| | | | Sbjct 86005 TGAGCAGTTTACCACGGAGCGGAAAGACACCGAAGAGATCCTGATTGACGACAGCACGTC 86064 Query 168482 CAGCGACAGCGAGAGTTTTCGCTGAATCACCCTCTGTCACGATGAGTGT--ACACTTTCC 168539 |||| | || || | || || || ||||| || | |||||||| | | | | Sbjct 86065 CAGCAAGCGCAAGGACACTGGCCGACTCTCCCTCGGTGAGAATGAGTGTGCAGAGGTGGC 86124 Query 168540 AGACTGTGCCGTACCAGCTTTGTTCGCATCGTCCAATTTGG 168580 | || || |||||||||||||| |||||| ||| |||| Sbjct 86125 CGTCTTTG--GTACCAGCTTTGTTGGCATCGGTCAACTTGG 86163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588971759372800