Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq20 316 2e-81 seq230 150 2e-31 >seq20 Length=105358 Score = 316 bits (350), Expect = 2e-81 Identities = 1131/1747 (65%), Gaps = 31/1747 (2%) Strand=Plus/Plus Query 105581 GCCTTAGATCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGC 105640 ||| ||| |||||||||||||| || ||||| || || | ||||| || | |||| Sbjct 11657 GCCATAGTGCGGAGATAGTACATTCCAGTCTTCAGCCCAAGCTTCCAGCCGGCAAAATGC 11716 Query 105641 ATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGG 105700 || |||| || |||| ||| || || | |||| || |||| ||| |||| Sbjct 11717 ATCGAAGTGATCTTGCCCATGGTCGGCTCCTTCATGTGAATGTTCAAGGACTGAGACTGG 11776 Query 105701 TCAATGAAGCGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGATTTCCCAC 105760 || ||||| |||||| | || ||||| | |||| | | ||| |||||| Sbjct 11777 TCGATGAACGCACCACGGTCGGCAGCCATCTGGATGATGGTGCGCTGCGAGATCTCCCAC 11836 Query 105761 ACTGTGCGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCC 105820 ||||| ||| ||| |||| | || || ||||| | | || | ||||| ||||| Sbjct 11837 ACTGTCTTGTACAGAGTCTTCGTCTCTTCAGGGATGTTGGGAATCCTCTGAATGGAACCG 11896 Query 105821 CCCGCCTTGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCA 105880 || | || || | | |||||| | || ||||| || || || | |||||| Sbjct 11897 CCATCGGCGATGATACGGTTCTTCATGTTCTCAGACCACAGTCCCATGTCAACGAGATCT 11956 Query 105881 TTGACGAGATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGA-TAGAT 105939 || | ||| |||||| | |||||| || || || | | ||| ||||| Sbjct 11957 TTCAAGAGCCAGGGGTTGACGACTTGAAACTCGCCGGCCAGCACACGGCG-AGAGTAGAT 12015 Query 105940 GTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATT-TGTGCGGTGGAGGCTG 105998 ||| | ||||||||| || ||||| || ||||| ||||||| | || | || || || | Sbjct 12016 GTTTGACGTGTAGGGCTCGAAGCACTCGTTATT-CCCAAGAATCTGAGACGTAGATGCGG 12074 Query 105999 TTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTT-- 106056 | ||||| ||||| | ||||||| || |||| || | | ||| ||||| Sbjct 12075 TCGGCATGGGTGCAACCAAAAGAGAATTGCGAACGCCGTGCTGTGCGATCTTGTCCTTCA 12134 Query 106057 --GAGAAC--ATCCCAGTCGTAGTTGAGCTTGGTTTCACCTTCCCACATATCAAATTGAA 106112 ||| | ||||||| || | || | ||| | || |||| ||| || | |||| Sbjct 12135 GCGAGGCCCAATCCCAG----AGATCAG-TGGGTGTGACGTTCC-ACAGGTCGTACTGAA 12188 Query 106113 GCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCA 106172 || |||||||| | |||||||| || ||||| | || | || | | | ||| | Sbjct 12189 GCTGGCCTTGGGAGATAGGAGAACCTTCGTATGTCGCGTAAGGGCCCAGCTCCTTAGCAA 12248 Query 106173 ATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCT 106232 || || | |||| ||||| || ||||| || ||||| | || | || Sbjct 12249 TGTCGCAAGATGAGGTGAGGGCCGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCT 12308 Query 106233 CCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTT 106292 |||||| || || || || | |||| | || |||| |||||||| | Sbjct 12309 TCTTGGCCTCGGGCGACTCGAAGGGCAAGCGTAGTGCCAGGAAGGCATCAGCGAGACCCT 12368 Query 106293 GAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGAT 106352 ||||||| | || ||||||||||| || | ||| || || ||| || || | Sbjct 12369 GAACACCGAGCCCGATAGGTCTGTGACGGAAATTGCTGCGACGTGCTTCCTCTACTGGGT 12428 Query 106353 AAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAA 106412 | || || |||| ||| | || |||||||| | |||| ||| || | Sbjct 12429 AGTGGTTGACTTCGATGATCTTGTTCAAGTTGCGGGTAACAACTTGGGTGACTTCGTGGA 12488 Query 106413 GTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTG---ACATACTTTGGAAGGGCGATTG 106469 |||| | | ||||| | | | | ||| || | || || || || |||| | Sbjct 12489 GTTTGTTGAAGTCAAAC-TCCCCG-CGCTT-ATAGTCCACGAACGAGGGGAGCGCGAGCG 12545 Query 106470 ATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACA 106529 | || | || || || || |||||| | | |||||||| | || || || || | Sbjct 12546 AGGCGAGGTTACATACCGCTACCTCATCAGGAGCAGTGTACTCGACGATCTCGGTGCAGA 12605 Query 106530 AGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCT 106589 ||| || || ||| || || | |||||||||||| ||||| |||||| ||||| | Sbjct 12606 GGTTAGAGCTGCGAATGGTACCAAGATTCTTTTGGTTGCTCTTCCGGTTGCAAGCATCTT 12665 Query 106590 TGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACAT 106649 ||||||||||| | || | || ||||||||||| | || || || || | ||| | | Sbjct 12666 TGTAGAGCATGAAAGGGTTACCAGTCTCCGTCTGAGCCTCAAGGATGGCATACCAGAGCT 12725 Query 106650 CGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTA-CTTTGTGTAGAGGGCT 106708 ||| | ||| | | | || || ||||| | || |||||| | Sbjct 12726 TTTGGGCGCGAACAGTCTCCCGACCACGGTTGTCACGTTCGTAACGATG-GTAGAGCTCC 12784 Query 106709 TCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGAC 106768 || ||||| ||||| | |||||| ||||| || || | || || ||||| || | | Sbjct 12785 TCGAACTCATCACCATACACGTCGGCAAGACCAGGGGCTTCGTTGGGGCAGAATAGCGTC 12844 Query 106769 CATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAG 106828 || | |||| ||||| ||| |||||||||||||||||||||||||| || | | ||| Sbjct 12845 CACTCACCATTCTCCTGAACGCGCTTCATGAAAAGGTCTGGAATCCATAGTGCGTAGAAG 12904 Query 106829 AGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATG 106888 || || | ||| | || || | || ||||| || | |||||||| | | | Sbjct 12905 AGGTCACGGGCACGAACTTCCTCTTTGCCATGGTTCTTGCGAAGATCAAGGAAACCGAAG 12964 Query 106889 ATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGC 106944 | ||| || ||||||||||| || |||| |||| | || | | | ||| | | Sbjct 12965 ACATCAGCATGCCATGGCTCCAGGTAGATGGCGAAGGCGCCAGGGCGCTTGTTGCC-ACC 13023 Query 106945 TTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGA 107004 ||||| ||||| || || ||| ||| | || |||||||| ||||| | ||| | || Sbjct 13024 TTGATCAACATAACGAGCCGTGTTGTTGTAGACACGAAGCATGGGAATGAGACCGTTCGA 13083 Query 107005 TTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCC 107064 | |||||| || || | || ||| | |||| | | | || | || | || Sbjct 13084 TGTACCATTGGTGCCACCGATGTAAGAGCCAGTGGCACGGATACGGTGAACGTTGAGACC 13143 Query 107065 AATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTT 107124 |||||| ||||| ||| ||||| ||||| | | || || | ||||| || | Sbjct 13144 AATACCGCCAGCGGTCTTGGAGATCAAGGCACAAGTCTTGAGTGTGTCGTAGATGCCATC 13203 Query 107125 GATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACC 107184 || ||||||||| || |||| |||||||| ||||| || || ||||||| || Sbjct 13204 AATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGACGACATTTGAGGATTTGGTGTGCC 13263 Query 107185 AGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC-CTTGGGACATCTTGTCGTATG 107243 |||||||||||||| || | ||||| |||| ||| ||| ||||| | |||||| | Sbjct 13264 CGCATTGAAGAGGGTAGGCGAAGCGTGTGTGAA-GTACTTTTGCGACATGTAGTCGTAAG 13322 Query 107244 TCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGT 107303 |||| | | || |||| || || |||||||||| ||||| ||||| ||||||| Sbjct 13323 TCTCAATCGCCTTCTCGATGTTCTCTCCATGGATGCCGACAGCCACGCGCATCAACATGT 13382 Query 107304 ATTGGGG 107310 ||| || Sbjct 13383 GTTGTGG 13389 >seq230 Length=87271 Score = 150 bits (166), Expect = 2e-31 Identities = 351/519 (68%), Gaps = 14/519 (3%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 ||||| || || ||||||||||||||||||||||| || | || ||||| ||||| Sbjct 45768 TAGTCACCGACGCGCTTCTCAAAGAAGTTGGTCTTGCCCGCCAGAGAGATGTTCTCCATG 45709 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCA--AATGGGTGGCACCCCAACTTGTTTGAGGAGAC 117103 ||||| || || || | ||||| | | | | || ||| || || || | Sbjct 45708 AAGTCGAAGGGGTTGGTGGCGTTGTAGTACTTGTTGTTACC--AAGGGACAGCAGAAGGC 45651 Query 117104 GATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTAC 117163 |||| | |||| |||||||||||| | |||| |||||||||| || | ||| | Sbjct 45650 GATCAGCCACAAACTCAATGTACTGGCACATGAGTGCAGAGTTCATGCCAAGCAGAGCGC 45591 Query 117164 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 117223 | ||||| || || || |||| | ||||| ||| | || ||||| | | |||||| | Sbjct 45590 AGGGGAGAGCATCTGTGAGGAACTCCTTCTCGATCGCGACGGCCTCAGTGATGATGGCCT 45531 Query 117224 GGATAGTTTCGGTAGTGGGTC---TATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACT 117280 ||| | || || |||| | | || | | || || ||| || |||||| | Sbjct 45530 GGACGGCATCCTTACTGGGGCGTGTGTTGAGGAGAGAGAAGAGGAGG--CA-GGCAAAGT 45474 Query 117281 CCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGA 117340 | ||| | ||||| || || || || || || |||||||| || || ||||| | Sbjct 45473 CAGTGTGCATGCCCTCGTCGCGAGAGATCAGCTCGTTTGAGAATGTGAGACCGGGCATCA 45414 Query 117341 GACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACCCTCC 117399 | || |||||||||||||| | || | ||| ||| || ||| ||||||||| ||||| Sbjct 45413 GGCCACGCTTCTTCAACCAGAAGATGGACGC-GAACGAGCCGCTGAAGAAGATGCCCTCA 45355 Query 117400 ACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCA-AACCATTT 117458 || || || || | || || | |||||||| |||| |||| | | | |||||| Sbjct 45354 ACGGCGGCGAATGCGACCAGACGGTTGGCGAAGG-TCGAGTTCTTGTCTGAGATCCATTT 45296 Query 117459 CATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGT 117497 | ||||| | |||||||| ||| ||||| || || Sbjct 45295 GAGGGCCCAGTCAGCCTTCTTGCGAATGCATGGAACTGT 45257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589976552138240