Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq254 122 2e-22 seq241 118 2e-21 seq275 89.7 1e-12 seq20 86.0 1e-11 >seq254 Length=118772 Score = 122 bits (134), Expect = 2e-22 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || |||||||| || ||||| || |||||||||| || || | ||||| ||| Sbjct 32800 ACGAGATGTAGAGTGGATTCCTTTTGGATGTTGTAATCGGAGAGGGTACGGCCATCCTCG 32859 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||| || | || || ||||| ||||| ||||| || || || ||| Sbjct 32860 AGCTGCTTGCCGGCGAAAATCAAGCGCTGCTGGTCCGGAGGGATGCCCTCCTTATCCTGA 32919 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| ||||||||| || || || || || || || |||||||| | ||||| Sbjct 32920 ATCTTTGACTTGACGTTGTCGATCGTATCGGATGACTCAACCTCAAGGGTGATGGTCTTG 32979 Query 195112 CCTGT 195116 || || Sbjct 32980 CCGGT 32984 Score = 116 bits (128), Expect = 8e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| ||||||||||| || || || ||||| || | ||||| | || ||||||||||| Sbjct 32577 GTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTACGGCCGTCTTCGAGCTG 32636 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || || || ||||| || || || || ||||| || || ||||| ||||| || Sbjct 32637 CTTGCCAGCAAAAATGAGTCGCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAATCTT 32696 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| ||||| ||||| ||||| ||| || || || | || | ||||| || || Sbjct 32697 CGACTTCACGTTGTCAATCGTGTCTGAAGACTCAACCTCCAATGTGATAGTCTTGCCAGT 32756 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | ||||| Sbjct 32757 GAGTGTCTTGACGAAGATCTGCAT 32780 Score = 109 bits (120), Expect = 1e-18 Identities = 149/207 (72%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || ||||| || ||||||||||| ||| || |||| || ||||| | ||| Sbjct 32349 GTGCAGTGTCGACTCCTTCTGAATATTGTAGTCGCTGAGCGTTCGGCCGTCTTCCAACTG 32408 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| |||||||| || || || ||||| || || || || || |||||||| || || Sbjct 32409 CTTACCAGCGAAGATGAGACGCTGCTGGTCAGGCGGGATACCCTCCTTGTCTTGGATCTT 32468 Query 195057 TTGCTTGACGTTCTCAATGGTGTC---CGAACTTTCCACTTCAAGGGTAACCGTCTTTCC 195113 || ||||| || ||||| || ||| ||| ||||| | || | ||||| || Sbjct 32469 CGATTTCACGTTGTCGATGGTATCGCTCGA---TTCGACTTCCAATGTGATAGTCTTGCC 32525 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||| || || || | |||||| Sbjct 32526 AGTAAGAGTCTTGACAAAGATTTGCAT 32552 >seq241 Length=242151 Score = 118 bits (130), Expect = 2e-21 Identities = 134/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || ||||| || || || ||||| |||| ||||| | || || |||||||| Sbjct 46840 GTGGAGCGTTGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCGTCCTCGAGCTG 46781 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| | || || ||||| || |||||||| || ||||| || || || Sbjct 46780 CTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTT 46721 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| || || |||||||| || ||||| || ||||| | |||||| || || Sbjct 46720 GGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATCGTCTTGCCGGT 46661 >seq275 Length=365033 Score = 89.7 bits (98), Expect = 1e-12 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || ||||| || || || ||||| |||| || || | ||||| |||||||| Sbjct 273841 GTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTG 273782 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 ||| || |||||||| || || || ||||| || |||||||| || |||||| Sbjct 273781 CTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCT 273730 >seq20 Length=105358 Score = 86.0 bits (94), Expect = 1e-11 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 160589 TTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGG 160648 |||||||| | |||| | | || |||||||||||| | || | || ||||| || ||| Sbjct 12903 TTCTACGCACTATGGATTCCAGACCTTTTCATGAAGCGCGTTCAGGAGAATGGTGAGTGG 12844 Query 160649 AGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGAG 160708 | || ||||| ||||| ||||| ||||| |||| || || |||||| ||||||||| Sbjct 12843 ACGCTATTCTGCCCCAACGAAGCCCCTGGTCTTGCCGACGTGTATGGTGATGAGTTCGAG 12784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109473412025792