Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq20 233 4e-56 seq230 203 6e-47 >seq20 Length=105358 Score = 233 bits (258), Expect = 4e-56 Identities = 830/1273 (65%), Gaps = 43/1273 (3%) Strand=Plus/Plus Query 212907 GGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAG 212966 |||||||| | || || || || | ||||| | | ||| | |||||| |||||| Sbjct 11969 GGGTTGACGACTTGAAACTCGCCGGCCAGCACACGGCGAGAGTAGATGTTTGACGTGTAG 12028 Query 212967 GGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCC 213026 ||||||| || |||||| ||||| |||||||| | || || || |||||||| || Sbjct 12029 GGCTCGAAGCACTCGTTATTCCCAAGAATCTGAGACGTAGATGCGGTCGGCATGGGTGCA 12088 Query 213027 ACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCC 213086 |||| ||| || | || ||||||| |||| | | ||| ||||| ||| Sbjct 12089 ACCAAAAGAGAATTGCGAACGCCGTGCTGTGCGATCTTGTCCTTCAGCGAGGCCCAATCC 12148 Query 213087 CATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATG-CCTTT 213145 || ||| ||| | |||||||||| ||| |||| ||| || |||| Sbjct 12149 CAGAGATCAGTG-GGTG--------TGACGTTCCACAGGTCGTACTG-AAGCTGGCCTTG 12198 Query 213146 GCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGA 213205 | | || || | ||| | | ||| ||||| ||||||| || | ||||| || Sbjct 12199 GGAGATAGGAGAACCTTCGTATGTCGCGTAAGGGCCCAGCTCCTTAGCAATGTCGCAAGA 12258 Query 213206 CGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTC 213265 | ||||| |||| ||||||||| || || |||| ||||||||||||||||||| Sbjct 12259 TGAGGTGAGGGCCGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTTCTTGGCCTC 12318 Query 213266 TGGGGACGTGAAGGGC-ATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGA 213324 || ||| ||||||| | | | ||| |||| ||||||| || ||||| || |||| Sbjct 12319 GGGCGACTCGAAGGGCAAGCGTAGTGC-CAGGAAGGCATCAGCGAGACCCTGAACACCGA 12377 Query 213325 TGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGA-GCAC-TCCTCCAAGGGGTAAAAGTT 213382 ||||| |||||||| | | || || || | | ||||| | ||||| ||| Sbjct 12378 GCCCGATAGGTCTGTGACGGAAATT--GCTGCGACGTGCTTCCTCTACTGGGTAGTGGTT 12435 Query 213383 GCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTC 213442 | |||||||||||||| | ||||||||| | |||| |||||| | | || | | Sbjct 12436 GACTTCGATGATCTTGTTCAAGTTGCGGGTAACAACTTGGGTGACTTCGTGGAGTTTGTT 12495 Query 213443 GTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTT 213502 | | ||| | || | | | ||| ||| || || |||| ||| ||||| Sbjct 12496 GAAGTCAAACTCCCCGCGCTTATAGTCCACGAACGAGGGGAGCGCGAGCGAGGCGAGGTT 12555 Query 213503 GCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCA 213562 || || || ||||| | || | |||||||| | |||||||||||| ||||| || Sbjct 12556 ACATACCGCTACCTCATCAGGAGCAGTGTACTCGACGATCTCGGTGCAGAGGTTAGAGCT 12615 Query 213563 TCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCAT 213622 || ||||| || || |||| ||||| ||| |||| || ||| ||||||||||| Sbjct 12616 GCGAATGGTACCAAGATTCTTTTGGTTGCTCTTCCGGTTGCAAGCATCTTTGTAGAGCAT 12675 Query 213623 GTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGC--TCCAGAGGTACCTGGCC 213680 | | ||| || ||||| ||| | | | || | |||| |||||| | ||| | Sbjct 12676 GAAAGGGTTACCAGTCTCCGTCTGAGCCTCAAGGA--TGGCATACCAGAGCT-TTTGGGC 12732 Query 213681 TTGACCACCCGCCTGACAGCTCCGGGCGT-AGCCTCGTACTGTTCGTAGAGCTCGTTGAA 213739 || || | || || | ||| || | ||||| | | ||||||||| | ||| Sbjct 12733 GCGAACAGTCTCCCGA---CCACGGTTGTCACGTTCGTAACGATGGTAGAGCTCCTCGAA 12789 Query 213740 TTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGC---GGGACACATGAGGCTCCA 213796 || | || | || | | || || || || | | ||| || | || |||| Sbjct 12790 CTCATCACCATACACGTCGGCAAGACCAGG---GGCTTCGTTGGGGCAGAATAGCGTCCA 12846 Query 213797 GTCCCCGTCATCTCTG-ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACA 213855 || || | || ||| || | || |||||| ||||| || | ||| || ||| ||| | Sbjct 12847 CTCACCATTCTC-CTGAACGCGCTTCATGAAAAGGTCTGGAATCCATAGTGCGTAGAAGA 12905 Query 213856 GGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGA 213915 |||| | || | || || ||| ||| ||||| ||||| || || | |||| Sbjct 12906 GGTCACGGGCACGAACTTCCTCTTTGCCATGGTTCTTGCGAAGATCAAGGAAACCGAAGA 12965 Query 213916 TGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCCCT 213972 || || ||||| ||||||| ||||||||| |||||||| | || | ||||| || | Sbjct 12966 CATCAGCATGCCATGGCTCCAGGTAGATGGCGAAGGCGCCAGGGCGCTTGTTGCCACCTT 13025 Query 213973 GGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACT 214032 | || || | ||| ||||| ||| || || | ||| | || ||||| || | Sbjct 13026 GATCAACATAACGAGCCGTGTTGTTGTAGACACGAAGCATGGGAATGAGACCGTTCGA-T 13084 Query 214033 GT-CCGTTGGTTCCCGCTATATACGAGCCGGAGGCCC--TCAGGTTGCTCATGGAGAGCC 214089 || || ||||| || | || || ||||| | ||| | | | || | | |||| | Sbjct 13085 GTACCATTGGTGCCACCGATGTAAGAGCCAGTGGCACGGATACGGTGAACGTTGAGA--C 13142 Query 214090 CTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGG 214149 | || || || ||| ||||||||||| ||| || | | | || || |||||| Sbjct 13143 CAATACCGCCAGCGGTCTTGGAGATCAAGGCACAAGTCTTGAGTGTGTCGTAGATGCCAT 13202 Query 214150 CCATGCTGTCATC 214162 | |||||||| || Sbjct 13203 CAATGCTGTCCTC 13215 >seq230 Length=87271 Score = 203 bits (224), Expect = 6e-47 Identities = 359/518 (69%), Gaps = 13/518 (3%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | |||||||||||||| ||||| ||| ||| ||||||||||| Sbjct 45772 CTGGTAGTCACCGACGCGCTTCTCAAAGAAGTTGGTCTTGCCCGCCAGAGAGATGTTCTC 45713 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATAC-ACCCGT-GTCAGGCCCATCTGTTCCAGC 47956 ||||||| ||||||||||| | ||| || || || || | || | ||| Sbjct 45712 CATGAAGTCGAAGGGGTTGGTGGCGTTGTAGTACTTGTTGTTA--CCAAGGGACAGCAGA 45655 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 ||| |||| || || |||| ||||| | ||||||| | ||||||||| | || Sbjct 45654 AGGCGATCAGCCACAAACTCAATGTACTGGCACATGAGTGCAGAGTTCATGCCAAGCAGA 45595 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 | ||| | ||| | |||||| ||||||||||| ||| ||||| || | || Sbjct 45594 GCGCAGGGGAGAGCATCTGTGAGGAACTCCTTCTCGATCGCGACGGCCTCAGTGATGATG 45535 Query 48077 TGCTTAACGCGGGACT--CTGAGG-GTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAG 48133 || ||| || ||| || || ||||| | || | |||| | |||| Sbjct 45534 GCCTGGACGGCATCCTTACTGGGGCGTGTGTTGAGGAGA------GAGAAGAGGAGGCAG 45481 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 |||||||| |||||| ||| ||||| || ||| ||| |||| ||||| |||||| Sbjct 45480 GCAAAGTCAGTGTGCATGCCCTCGTCGCGAGAGATCAGCTCGTTTGAGAATGTGAGACCG 45421 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||| | || | || || | |||||| || | |||||| ||||| |||||||||| Sbjct 45420 GGCATCAGGCCACGCTTCTTCAACCAGAAGATGGACGCGAACGAGCCGCTGAAGAAGATG 45361 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC 48313 ||||| || || ||||| ||| || | | |||| | | |||||||||||||||| Sbjct 45360 CCCTCAACGGCGGCGAATGCGACCAGACGGTTGGCGAAGGTCGAGTTCTTGTCTGAGATC 45301 Query 48314 CAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 || || |||||||| |||||||| |||||||| Sbjct 45300 CATTTGAGGGCCCAGTCAGCCTTCTTGCGAATGCATGG 45263 Score = 98.7 bits (108), Expect = 2e-15 Identities = 173/250 (69%), Gaps = 3/250 (1%) Strand=Plus/Minus Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 |||| ||||| || ||||| || ||||||||| ||||||||| | |||||| | Sbjct 45136 TCTCCGAGTGGACGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGCGCCTCAGGTA 45077 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 || ||||| |||||| | ||| | || ||||| ||||| || || || || |||| Sbjct 45076 TTTGTACTTCGCCGGAGAAGCGCTCGACAAGGTTCTCGTTGACGATGCCGTCGGAGGCAG 45017 Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGA-GCAT--TCC 48605 | ||||| || ||||| || | ||| |||||||| || | |||| || | ||| Sbjct 45016 CGAAGAAAGCGAGGACGTGGGAGATGAAGAAGCGCTCGTCGTCGTTGAGTCGCTTGTTCC 44957 Query 48606 AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTT 48665 | | || | |||||| ||||| | || || | ||||||||||| || || | Sbjct 44956 AATCGTGAAGATCTTTGGAGAGGTCGATCTCCTCTGCGGTCCAGAAGGAGGCCTCGGCCT 44897 Query 48666 TTTTGTACAT 48675 | |||||||| Sbjct 44896 TCTTGTACAT 44887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931526092963840