Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29]
576 sequences; 38,548,368 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq20 188 1e-42
seq230 165 2e-35
>seq20
Length=105358
Score = 188 bits (208), Expect = 1e-42
Identities = 694/1075 (65%), Gaps = 39/1075 (4%)
Strand=Plus/Plus
Query 221406 CGCAAGACTGCGTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCT 221465
||||||| || ||||| ||||||||||||||||| |||||| ||||||| |||
Sbjct 12252 CGCAAGATGAGGTGAGGGCCGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTTCT 12311
Query 221466 TGGCCTCGGGAGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTA 221525
|||||||||| || |||||||| || || | | ||| | || || || ||||| |
Sbjct 12312 TGGCCTCGGGCGACTCGAAGGGCAAGCGTAGTGCCAGGAAGGCATCAGCGAGACCCTGAA 12371
Query 221526 CTCCGATACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGC-CGCTTCTGGCACGGGATAA 221584
| |||| ||||| || ||||| | || | ||| | ||||| || || ||
Sbjct 12372 CACCGAGCCCGATAGGTCTGTGACGGAAATT-GCTGCGACGTGCTTCCTCTACTGGGTAG 12430
Query 221585 AAGTTGACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGC 221644
|||||| ||||| | ||||| | ||| | | |||| || | ||| | |
Sbjct 12431 TGGTTGACTTCGATGATCTTGTTCAAGTTGCGGG---------TAACAACTTGGGTGA-C 12480
Query 221645 TTC-TGG---TGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTT 221700
||| ||| | ||||| | ||||| |||| | | | ||||| || | |
Sbjct 12481 TTCGTGGAGTTTGTTGAAGTCAAACTCCCCGCGCTTATAG------TCCACGAACGAGGG 12534
Query 221701 TAGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGAT 221760
|| || | ||| |||||||| || || ||||| || || |||| | |||
Sbjct 12535 GAGCGCGAGCGAGGCGAGGTTACATACCGCTACCTCATCAGGAGCAGTGTACTCGACGAT 12594
Query 221761 CTCTGTACAGAGGTT---GCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCG 221817
||| || |||||||| ||||| ||||| || || | || || || ||| ||
Sbjct 12595 CTCGGTGCAGAGGTTAGAGCTGC---GAATGGTACCAAGATTCTTTTGGTTGCTCTTCCG 12651
Query 221818 ATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAAT 221877
||| ||| || ||||||||||| || || ||||||||| ||||||| | || ||
Sbjct 12652 GTTGCAAGCATCTTTGTAGAGCATGAAAGGGTTACCAGTCTCCGTCTGAGCCTCAAGGAT 12711
Query 221878 CTTGTCCCAGAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATA 221937
| |||||| | | ||||| || || ||| ||| ||| | | ||| ||
Sbjct 12712 GGCATACCAGAGCTTTTGGGCGCGAACAGT-CTCCCGAC--CACGGTTGTCACGTTCGTA 12768
Query 221938 CCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGC 221997
| |||||| || |||| ||||| ||| | ||| | || || || |
Sbjct 12769 ACGATGGTAGAGCTCCTCGAACTCATCACCATACACGTCGGCAAGACCAGGGGCTTCGTT 12828
Query 221998 GGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGAT 222057
||| || | || |||| | || || | || | || |||||| ||||| || ||
Sbjct 12829 GGGGCAGAATAGCGTCCACTCACCATTCTCCTGAACGCGCTTCATGAAAAGGTCTGGAAT 12888
Query 222058 CCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAG 222117
||| || || | ||||| || | || || ||||| ||| | ||| || | ||
Sbjct 12889 CCATAGTGCGTAGAAGAGGTCACGGGCACGAACTTCCTCTTTGCCATGGTTCTTGCGAAG 12948
Query 222118 ATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGG 222177
||| | || | || | ||||| ||||| |||||||| |||| ||| | ||||| ||
Sbjct 12949 ATCAAGGAAACCGAAGACATCAGCATGCCATGGCTCCAGGTAGATGGCGAAGGCGCCAGG 13008
Query 222178 TCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGG 222237
|||||||||||||| ||||| || | || |||| ||| ||||| | ||
Sbjct 13009 GCGCTTGTTGCCACCTTGATCAACATAACGAGCCGTGTTGTTGTAGACACGAAGCATGGG 13068
Query 222238 TACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTT 222297
| || ||||| ||| ||| |||||||| ||||| | || ||| | || |
Sbjct 13069 AATGAGACCGTTCGATGTACCATTGGTGCCACCGATGTAAGAGCCAGTGGCAC---GGAT 13125
Query 222298 ACTGGCAGACATG---CCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAG 222354
|| | | || || ||||| || ||| || ||||||| ||| || |||||||
Sbjct 13126 ACGGTGAACGTTGAGACCAATACCGCCAGCGGTCTTGGAGATCAAGGCACAAGTCTTGAG 13185
Query 222355 AGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACAT 222414
||||| |||||| || || ||||||||| | || | || || || ||||||||
Sbjct 13186 TGTGTCGTAGATGCCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGACGACAT 13245
Query 222415 CTGA-GATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTA 222468
||| |||||||| | | || || || || || || |||||||| |||||
Sbjct 13246 TTGAGGATTTGGT-GTGCCCGCATTGAAGAGGGTAGGCGAAGCGTGTGTGAAGTA 13299
>seq230
Length=87271
Score = 165 bits (182), Expect = 2e-35
Identities = 333/497 (67%), Gaps = 21/497 (4%)
Strand=Plus/Plus
Query 25834 TGGGCCATGAAGTGGATCAACAGCCA-GAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892
|||||| | || |||||| ||| || || | | || || | | | || ||||| || ||
Sbjct 45287 TGGGCCCTCAAATGGATCT-CAGACAAGAACTCGACCTTCGCCAACCGTCTGGTCGCATT 45345
Query 25893 TGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCA 25952
|| || || ||||||||||| |||||||| ||||| ||| ||||||||||| | ||| |
Sbjct 45346 CGCCGCCGTTGAGGGCATCTTCTTCAGCGGCTCGTTCGCGTCCATCTTCTGGTTGAAGAA 45405
Query 25953 GAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCT 26012
| || |||||||| || || || |||||||| ||| | |||||||| |
Sbjct 45406 GCGTGGCCTGATGCCCGGTCTCACATTCTCAAACGAGCTGATCTCTCGCGACGAGGGCAT 45465
Query 26013 CCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAA---CCTTCTCA 26069
|||| || ||||||||||| |||| | | | ||| ||| | || | |
Sbjct 45466 GCACACTGACTTTGCCTGCCTCCTCTTCTC------TCTCCTCAACACACGCCCCAGTAA 45519
Query 26070 AGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNN 26129
|| ||||| | ||||||| ||||| || | ||||||||||||||| |
Sbjct 45520 GGATGCCGTCCAGGCCATCATCACTGAGGCCGTCGCGATCGAGAAGGAGTTCCTCACAGA 45579
Query 26130 NNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTA 26189
| ||||||||| ||||||| |||| ||||||||||
Sbjct 45580 TGCTCTCCCCTGCGCTCTGCTTGGCATGAACTCTGCACTCATGTGCCAGTACATTGAGTT 45639
Query 26190 TGTGGCCGA---CCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGC--CT 26244
|||||| || || |||||||| | || || | || ||||| |||| |
Sbjct 45640 TGTGGCTGATCGCCTTCTGCTGTCC---CTTGGTAACAACAAGTACTACA--ACGCCACC 45694
Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304
||||| |||||||| ||||| ||||| || ||| || ||||||||||||||||| |||
Sbjct 45695 AACCCCTTCGACTTCATGGAGAACATCTCTCTGGCGGGCAAGACCAACTTCTTTGAGAAG 45754
Query 26305 AGGGTCGGCGACTATCA 26321
| ||||| ||||| ||
Sbjct 45755 CGCGTCGGTGACTACCA 45771
Score = 84.2 bits (92), Expect = 4e-11
Identities = 174/256 (68%), Gaps = 5/256 (2%)
Strand=Plus/Plus
Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539
||| | |||||||||||||| | ||| ||||||||| || ||||| || || ||
Sbjct 44881 TGGCAAATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCAGAGGAGATCGACCTCTCC 44940
Query 25540 AAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGT---AC 25596
|| || | ||| ||| || | | ||| ||||| ||| || ||| | ||
Sbjct 44941 AAAGATCTTCACGATTGGAACAAGCGACTCAACGACGACGAGCGCTTCTTCATCTCCCAC 45000
Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656
|| | || ||||| || ||||| || || || || |||||||| || |||| | |||
Sbjct 45001 GTCCTCGCTTTCTTCGCTGCCTCCGACGGCATCGTCAACGAGAACCTTGTCGAGCGCTTC 45060
Query 25657 ACCAGGGAAGTGC-AGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGA 25715
|| | ||||| | | ||| | ||||| || |||||||| |||||||| || ||
Sbjct 45061 TCCGGCGAAGTACAAATACCT-GAGGCGCGATGCTTCTACGGCTTCCAGATCATGATGGA 45119
Query 25716 AAATGTGCACTCTGAG 25731
|| || ||||| |||
Sbjct 45120 GAACGTCCACTCGGAG 45135
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928838112317440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |