Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq20 188 1e-42 seq230 165 2e-35 >seq20 Length=105358 Score = 188 bits (208), Expect = 1e-42 Identities = 694/1075 (65%), Gaps = 39/1075 (4%) Strand=Plus/Plus Query 221406 CGCAAGACTGCGTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCT 221465 ||||||| || ||||| ||||||||||||||||| |||||| ||||||| ||| Sbjct 12252 CGCAAGATGAGGTGAGGGCCGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTTCT 12311 Query 221466 TGGCCTCGGGAGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTA 221525 |||||||||| || |||||||| || || | | ||| | || || || ||||| | Sbjct 12312 TGGCCTCGGGCGACTCGAAGGGCAAGCGTAGTGCCAGGAAGGCATCAGCGAGACCCTGAA 12371 Query 221526 CTCCGATACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGC-CGCTTCTGGCACGGGATAA 221584 | |||| ||||| || ||||| | || | ||| | ||||| || || || Sbjct 12372 CACCGAGCCCGATAGGTCTGTGACGGAAATT-GCTGCGACGTGCTTCCTCTACTGGGTAG 12430 Query 221585 AAGTTGACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGC 221644 |||||| ||||| | ||||| | ||| | | |||| || | ||| | | Sbjct 12431 TGGTTGACTTCGATGATCTTGTTCAAGTTGCGGG---------TAACAACTTGGGTGA-C 12480 Query 221645 TTC-TGG---TGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTT 221700 ||| ||| | ||||| | ||||| |||| | | | ||||| || | | Sbjct 12481 TTCGTGGAGTTTGTTGAAGTCAAACTCCCCGCGCTTATAG------TCCACGAACGAGGG 12534 Query 221701 TAGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGAT 221760 || || | ||| |||||||| || || ||||| || || |||| | ||| Sbjct 12535 GAGCGCGAGCGAGGCGAGGTTACATACCGCTACCTCATCAGGAGCAGTGTACTCGACGAT 12594 Query 221761 CTCTGTACAGAGGTT---GCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCG 221817 ||| || |||||||| ||||| ||||| || || | || || || ||| || Sbjct 12595 CTCGGTGCAGAGGTTAGAGCTGC---GAATGGTACCAAGATTCTTTTGGTTGCTCTTCCG 12651 Query 221818 ATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAAT 221877 ||| ||| || ||||||||||| || || ||||||||| ||||||| | || || Sbjct 12652 GTTGCAAGCATCTTTGTAGAGCATGAAAGGGTTACCAGTCTCCGTCTGAGCCTCAAGGAT 12711 Query 221878 CTTGTCCCAGAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATA 221937 | |||||| | | ||||| || || ||| ||| ||| | | ||| || Sbjct 12712 GGCATACCAGAGCTTTTGGGCGCGAACAGT-CTCCCGAC--CACGGTTGTCACGTTCGTA 12768 Query 221938 CCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGC 221997 | |||||| || |||| ||||| ||| | ||| | || || || | Sbjct 12769 ACGATGGTAGAGCTCCTCGAACTCATCACCATACACGTCGGCAAGACCAGGGGCTTCGTT 12828 Query 221998 GGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGAT 222057 ||| || | || |||| | || || | || | || |||||| ||||| || || Sbjct 12829 GGGGCAGAATAGCGTCCACTCACCATTCTCCTGAACGCGCTTCATGAAAAGGTCTGGAAT 12888 Query 222058 CCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAG 222117 ||| || || | ||||| || | || || ||||| ||| | ||| || | || Sbjct 12889 CCATAGTGCGTAGAAGAGGTCACGGGCACGAACTTCCTCTTTGCCATGGTTCTTGCGAAG 12948 Query 222118 ATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGG 222177 ||| | || | || | ||||| ||||| |||||||| |||| ||| | ||||| || Sbjct 12949 ATCAAGGAAACCGAAGACATCAGCATGCCATGGCTCCAGGTAGATGGCGAAGGCGCCAGG 13008 Query 222178 TCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGG 222237 |||||||||||||| ||||| || | || |||| ||| ||||| | || Sbjct 13009 GCGCTTGTTGCCACCTTGATCAACATAACGAGCCGTGTTGTTGTAGACACGAAGCATGGG 13068 Query 222238 TACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTT 222297 | || ||||| ||| ||| |||||||| ||||| | || ||| | || | Sbjct 13069 AATGAGACCGTTCGATGTACCATTGGTGCCACCGATGTAAGAGCCAGTGGCAC---GGAT 13125 Query 222298 ACTGGCAGACATG---CCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAG 222354 || | | || || ||||| || ||| || ||||||| ||| || ||||||| Sbjct 13126 ACGGTGAACGTTGAGACCAATACCGCCAGCGGTCTTGGAGATCAAGGCACAAGTCTTGAG 13185 Query 222355 AGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACAT 222414 ||||| |||||| || || ||||||||| | || | || || || |||||||| Sbjct 13186 TGTGTCGTAGATGCCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGACGACAT 13245 Query 222415 CTGA-GATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTA 222468 ||| |||||||| | | || || || || || || |||||||| ||||| Sbjct 13246 TTGAGGATTTGGT-GTGCCCGCATTGAAGAGGGTAGGCGAAGCGTGTGTGAAGTA 13299 >seq230 Length=87271 Score = 165 bits (182), Expect = 2e-35 Identities = 333/497 (67%), Gaps = 21/497 (4%) Strand=Plus/Plus Query 25834 TGGGCCATGAAGTGGATCAACAGCCA-GAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 |||||| | || |||||| ||| || || | | || || | | | || ||||| || || Sbjct 45287 TGGGCCCTCAAATGGATCT-CAGACAAGAACTCGACCTTCGCCAACCGTCTGGTCGCATT 45345 Query 25893 TGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCA 25952 || || || ||||||||||| |||||||| ||||| ||| ||||||||||| | ||| | Sbjct 45346 CGCCGCCGTTGAGGGCATCTTCTTCAGCGGCTCGTTCGCGTCCATCTTCTGGTTGAAGAA 45405 Query 25953 GAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCT 26012 | || |||||||| || || || |||||||| ||| | |||||||| | Sbjct 45406 GCGTGGCCTGATGCCCGGTCTCACATTCTCAAACGAGCTGATCTCTCGCGACGAGGGCAT 45465 Query 26013 CCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAA---CCTTCTCA 26069 |||| || ||||||||||| |||| | | | ||| ||| | || | | Sbjct 45466 GCACACTGACTTTGCCTGCCTCCTCTTCTC------TCTCCTCAACACACGCCCCAGTAA 45519 Query 26070 AGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNN 26129 || ||||| | ||||||| ||||| || | ||||||||||||||| | Sbjct 45520 GGATGCCGTCCAGGCCATCATCACTGAGGCCGTCGCGATCGAGAAGGAGTTCCTCACAGA 45579 Query 26130 NNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTA 26189 | ||||||||| ||||||| |||| |||||||||| Sbjct 45580 TGCTCTCCCCTGCGCTCTGCTTGGCATGAACTCTGCACTCATGTGCCAGTACATTGAGTT 45639 Query 26190 TGTGGCCGA---CCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGC--CT 26244 |||||| || || |||||||| | || || | || ||||| |||| | Sbjct 45640 TGTGGCTGATCGCCTTCTGCTGTCC---CTTGGTAACAACAAGTACTACA--ACGCCACC 45694 Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 ||||| |||||||| ||||| ||||| || ||| || ||||||||||||||||| ||| Sbjct 45695 AACCCCTTCGACTTCATGGAGAACATCTCTCTGGCGGGCAAGACCAACTTCTTTGAGAAG 45754 Query 26305 AGGGTCGGCGACTATCA 26321 | ||||| ||||| || Sbjct 45755 CGCGTCGGTGACTACCA 45771 Score = 84.2 bits (92), Expect = 4e-11 Identities = 174/256 (68%), Gaps = 5/256 (2%) Strand=Plus/Plus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||| | |||||||||||||| | ||| ||||||||| || ||||| || || || Sbjct 44881 TGGCAAATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCAGAGGAGATCGACCTCTCC 44940 Query 25540 AAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGT---AC 25596 || || | ||| ||| || | | ||| ||||| ||| || ||| | || Sbjct 44941 AAAGATCTTCACGATTGGAACAAGCGACTCAACGACGACGAGCGCTTCTTCATCTCCCAC 45000 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 || | || ||||| || ||||| || || || || |||||||| || |||| | ||| Sbjct 45001 GTCCTCGCTTTCTTCGCTGCCTCCGACGGCATCGTCAACGAGAACCTTGTCGAGCGCTTC 45060 Query 25657 ACCAGGGAAGTGC-AGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGA 25715 || | ||||| | | ||| | ||||| || |||||||| |||||||| || || Sbjct 45061 TCCGGCGAAGTACAAATACCT-GAGGCGCGATGCTTCTACGGCTTCCAGATCATGATGGA 45119 Query 25716 AAATGTGCACTCTGAG 25731 || || ||||| ||| Sbjct 45120 GAACGTCCACTCGGAG 45135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928838112317440