Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq354 129 2e-24 seq241 84.2 6e-11 seq162 84.2 6e-11 >seq354 Length=75842 Score = 129 bits (142), Expect = 2e-24 Identities = 185/261 (71%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642 ||||| | |||||| ||||||||||||||| || || || || ||||||||||| || Sbjct 37960 CTTGACGAGACGACGTTGAATATAACCAGTTTCAGCGGTCTTGACTGCTGTATCAATGAG 37901 Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAA 302702 ||| | |||||| |||| || || ||||| | |||| ||| || || | | | | Sbjct 37900 ACCCTCGCGACCAGCCATGGCGTGAAAGAAGAACTCTGACGGGGTCAGACCTCGCAAATA 37841 Query 302703 GGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAG 302762 |||| ||||||| || || |||| |||||| || | ||| |||||| || ||||||| Sbjct 37840 GGAGTTCTCAACAAAGCCTCGCGACTCGGGAGAGTAATCGTCCTTGGTGAAATGTGGCAA 37781 Query 302763 GGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCA 302822 | | || || ||||| | || ||||||| || || || ||| || || | Sbjct 37780 AGAGCGGTACTTGAAGCCGAAGGGAATACGCTGACCTTCGACAGCCTGTTGGCCAACAAG 37721 Query 302823 CGAAATCATCTGCGAAATATT 302843 || | |||||||||||| || Sbjct 37720 GGACACCATCTGCGAAATGTT 37700 Score = 95.1 bits (104), Expect = 4e-14 Identities = 332/510 (65%), Gaps = 14/510 (3%) Strand=Plus/Minus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 |||||||| | |||||| |||||||||||||| || ||||| || ||||||||||||||| Sbjct 68647 GCACCGTGAGCAATCATGCAATCACGCTCCATCTCTCCGAAGCGCAGACCACCATCGCGA 68588 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGT 251604 || | || || | || || || || ||| | || || || || ||| || Sbjct 68587 GCACGGCCTTCCACCGGTTGTCGGGTAAGAATCTGCAGTGGCCCTCGGGCACGGGCGTGG 68528 Query 251605 TGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATGCTC 251664 ||| |||| ||||||||| | | ||| |||||| | | || || | ||||| || Sbjct 68527 ATCTTGTCATCGACCATATGCCTCAAACGTTGGTAGTAAGTCGGGCCCAAGAAGA-CCTG 68469 Query 251665 GAAG-GCATTTGCTCTCCAGTTAGAGCGTTATACATAACTTCGTTTCCATTAGATTC--A 251721 | | |||| | || || || | | || ||||| | || ||| | ||| Sbjct 68468 AACGCGCATCTTCTTGCCGGTATGGCCATTGTACATGATCTCCAAACCA--CGCTTCTGG 68411 Query 251722 TAACCAAGTTTCTGTAGC---TCTGAAGCAATATCACCAATCTTGAATTTGCTAAAACTG 251778 |||||| || || | | ||||| | |||| || || | | | | ||| Sbjct 68410 TAACCAGCATTTTGCAACAAATCTGAGACCTGATCAACAGTC---ACGTCGGTGAAAGGT 68354 Query 251779 GTGCCGTCTCCGTAAAGACCCATTTGAATCAACACTTTGCCTAAAAGTGTCTCTTTCAGT 251838 ||| |||| || | | || | | | |||||| || || ||| || Sbjct 68353 GTGGCGTCACCCTCTTGCCCTGTAATAGCCCCGACTTTGGACAAGAGACACTCGACCAAA 68294 Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 ||||| || |||||||| ||||| || || || |||||||| | || || ||||| Sbjct 68293 TGGGCAATTGTCATACGGGATGGAATGGCGTGAGGGTTGATGATCAGATCTGGCGTCAGT 68234 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGTTTCCAATAGTTCCCTTTTG 251957 || || ||||| ||||| || | || | | ||| || | ||||| || || || || Sbjct 68233 CCTTCTTTGGTGAAAGGCATGTCTTCTTGC-CGATAGGTGATACCAATGGTACCTTTCTG 68175 Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987 ||||||||||| |||||||||||||| Sbjct 68174 ACCGTGACGAGACGCAAACTTATCACCAAT 68145 >seq241 Length=242151 Score = 84.2 bits (92), Expect = 6e-11 Identities = 79/98 (81%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 353971 TGAGATATAATAATCACACC-CCCAAGATAGCTCTTAATTGCTGTGGCGAGAGCACCAAG 354029 |||| || ||||| ||||| ||| || ||||||| || || ||| || ||||| || Sbjct 70144 TGAGTAATGATAATGACACCACCCTCGA-AGCTCTTGATGGCCTTGGACAGGGCACCGAG 70086 Query 354030 CGAGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGA 354067 |||||||||||||||| | |||||||| |||||||||| Sbjct 70085 CGAGTCACGGTCGAGGTAGTTAGTAGGCTCGTCAAGGA 70048 >seq162 Length=333193 Score = 84.2 bits (92), Expect = 6e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 353914 CGACCATCCACAACCGACCATACTTCGGGGCAGAGTGCAGAATAGAATTCCCGCTGATGA 353973 ||||| ||| |||| |||| |||||||| || ||| |||||| | ||| Sbjct 238155 CGACCGTCCGCAACGTGCCATTGCTCGGGGCACAGGGCACCGACGAATTCTTCGTTATGG 238214 Query 353974 GATATAATAATCACACCCCCAAGATAGCTCTTAATTGCTGTGGCGAGAGCACCAAGCGAG 354033 || || ||||||||||| || ||| || || || ||| ||||||| ||| Sbjct 238215 GAAATCATAATCACACCACCCTTGTAGTCGCGGATGGCGACAGCAAGACCACCAAGAGAG 238274 Query 354034 TCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAACGTGCGGCTCCATCCACATT 354093 || ||||| | |||||| || |||||||| |||| || | || || | ||||||| Sbjct 238275 TCGCGGTCCAAGAAATTGGTCGGTTCGTCGAGGACGAGGAGATGGGGGTTGTTCCACATG 238334 Query 354094 GCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAG 354134 || |||| || || ||||| ||||| || || || || || Sbjct 238335 GCACCAGCGAGCACGACCTTGACCTTTTGGCCTCCGGAGAG 238375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471806737986112