Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq230 138 1e-26 seq20 129 7e-24 seq343 122 1e-21 seq64 107 2e-17 seq13 102 1e-15 seq30 89.7 6e-12 >seq230 Length=87271 Score = 138 bits (152), Expect = 1e-26 Identities = 223/317 (70%), Gaps = 8/317 (3%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || |||||| ||| || ||||||||||||||| | || ||||| Sbjct 45777 GCCTTCTGGTAGTCACCGACGCGCTTCTCAAAGAAGTTGGTCTTGCCCGCCAGAGAGATG 45718 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | ||||||| ||| | | || || ||| Sbjct 45717 TTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGTACTTGTTGTTACCAAGGGACAGC 45658 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 || ||||| || || |||||||| ||||||||||||||||| | | ||||||||| | Sbjct 45657 AGAAGGCGATCAGCCACAAACTCAATGTACTGGCACATGAGTGCAGAGTTCATGCCAAGC 45598 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || || || | || | | ||||| ||||||||| |||||||||| |||| Sbjct 45597 AGAGCGCAGGGGAGAGCATCTGTGAGGAACTCCTTCTCGATCGCGACGGCCTCAGTGATG 45538 Query 868931 ATCTGCCTGGGCACGTCGGC----CGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCA 868986 || |||||| ||| | | | |||| || || ||| | | | |||| ||||| Sbjct 45537 AT-GGCCTGG--ACGGCATCCTTACTGGGGCGTG-TGTTGAGGAGAGAGAAGAGGAGGCA 45482 Query 868987 GGCAAAGTCGCAGTGCA 869003 ||||||||| ||||| Sbjct 45481 GGCAAAGTCAGTGTGCA 45465 Score = 132 bits (146), Expect = 6e-25 Identities = 189/264 (72%), Gaps = 4/264 (2%) Strand=Plus/Minus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 ||||||||| |||||| || ||||||||||||||| ||| | | |||| | | || Sbjct 45133 CCGAGTGGACGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGCGCCTCAGGTATTT 45074 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | || || ||| || || | ||||||||| |||||||||||| ||| |||| Sbjct 45073 GTACTTCGCCGGAGAAGCGCTCGACAAGGTTCTCGTTGACGATGCCGTCGGAGGCAGCGA 45014 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGA---GCGACACCCAGT 869807 | ||||| |||||||| ||| ||| ||||||||||||| ||| || ||| | Sbjct 45013 AGAAAGCGAGGACGTGGGAGATGAAGAAGCGCTCGTCGTCGTTGAGTCGCTTGTTCCAAT 44954 Query 869808 GGACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTT 869867 | || | |||||| | |||||| |||||||||| |||||||||||||| | Sbjct 44953 CGTGAAGATCTTTGGAGAGGTCGATCTCCTCTGCGGTCCAGAAGGAGGCCTCGGCCTTCT 44894 Query 869868 TGTACATCTCCCATACTTGCTGGT 869891 ||||||| | ||| || || |||| Sbjct 44893 TGTACATTTGCCAGACCTG-TGGT 44871 Score = 100 bits (110), Expect = 3e-15 Identities = 142/195 (73%), Gaps = 11/195 (6%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||||||| ||||| ||||| || | ||| |||||||| ||||| |||||| Sbjct 45462 CCCTCGTCGCGAGAGATCAGCTCGTTTGAGAATGTGAGACCGGGCATCAGGCCACGCTTC 45403 Query 869240 TTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 || | ||| ||||||| ||| ||| ||| ||| ||||||||||| |||||||| || Sbjct 45402 TTCAACCAGAAGATGGACGC-GAACGAGCCGCTGAAGAAGATGCCCTCAACGGCGGCGAA 45344 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT---TGATCCACTTCATCGC 869355 ||| || || | ||| ||| |||||| | ||||| |||||| || | || Sbjct 45343 TGCGACCAGACGGTTGGCGAAG--GTCGAG----TTCTTGTCTGAGATCCATTTGAGGGC 45290 Query 869356 CCAGTCGGCCTTTTT 869370 |||||| ||||| || Sbjct 45289 CCAGTCAGCCTTCTT 45275 >seq20 Length=105358 Score = 129 bits (142), Expect = 7e-24 Identities = 208/299 (70%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 || || || || || ||||||| ||| |||| || |||||||| | ||| ||||| || Sbjct 13025 TGATCAACATAACGAGCCGTGTTGTTGTAGACACGAAGCATGGGAATGAGACCGTTCGAT 13084 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 || |||||||| | | ||| | ||| | ||| || | ||| || | || Sbjct 13085 GTACCATTGGTGCCACCGATGTAAGAGCCAGTGGCACGGATACGGTGAACGTTGAGACCA 13144 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || ||||| || | ||||||||| | || || ||||| |||||||||||||| || Sbjct 13145 ATACCGCCAGCGGTCTTGGAGATCAAGGCACAAGTCTTGAGTGTGTCGTAGATGCCATCA 13204 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 || ||| |||||||||| | ||| ||||| ||||| |||| || | | ||||| Sbjct 13205 ATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGACGACATTTGAGGATTTGGTGTGCCC 13264 Query 1630306 GCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 || |||||||| || |||| || ||||| ||| |||||||| |||||| || Sbjct 13265 GCATTGAAGAGGGTAGGCGAAGCGTGTGTGAAGTACTTTTGCGACATGTAGTCGTAAGT 13323 >seq343 Length=64946 Score = 122 bits (134), Expect = 1e-21 Identities = 96/115 (83%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || |||||||| |||||||||||| | || ||||| | || |||||| | || ||||| Sbjct 20288 GCGGCCAACTATCTCGACATCAAGGCCCTTCTCGACGTCGGCTGCAAGACAGTTGCCAAT 20347 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||||||||||||||| ||||| |||||||||||||| || |||||| || ||| Sbjct 20348 ATGATCAAGGGCAAGTCTCCCGACGAGATCCGCAAGACGTTCAACATCCAGAACG 20402 >seq64 Length=246216 Score = 107 bits (118), Expect = 2e-17 Identities = 200/288 (69%), Gaps = 8/288 (3%) Strand=Plus/Plus Query 1852028 TCGGGATCGTCGAGGCCG---ATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGCTC 1852084 |||| || |||||| || ||||||||| | | ||| || |||||| ||||||| | Sbjct 187555 TCGGCATTGTCGAGCACGTCAATCTTGGAGTCAGGATCGGAGGAGCTCATTTTGCCGC-C 187613 Query 1852085 TCGGTGAGGCCCGGCACGAGCGGGTTGAGCAGGTGGAAGCGCTTCCGATAGCCGAGGACC 1852144 | | || || || || | ||||| | || ||| ||||| | |||||||| Sbjct 187614 TTGCAGA--CCGGGGACCATGGGGTTCATCAAGTGAGCGCGCTCCTTGTAGCCGAGCTTG 187671 Query 1852145 GGCAGGTGGTCGCGCGCAAAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCG 1852204 || ||| ||| || | ||| || ||||| ||||| || || || |||||| | Sbjct 187672 GGAAGGGCGTCTTTGGCGAGGGCGAAGATCTTACGCTGATCTACACCACCGAACTGGACA 187731 Query 1852205 TCGACGTCGAGGTGCTGCTCGTCGAGGGCCTGCATGAGCGGGTAGAGCACGTTGCTCAGG 1852264 ||||| ||||||| ||||||||| || ||||||||||| |||||||| | |||| Sbjct 187732 TCGACATCGAGGTACTGCTCGTCAAGAGCCTGCATGAGTGGGTAGAGAAGACCACTCAAA 187791 Query 1852265 AGCGGGTT-GCGGTCCATCTTGACCACCTGAGCGGCGGCCTTTTGCGC 1852311 ||| ||| |||| | |||||| |||| ||| | ||||| | ||| Sbjct 187792 GGCGCGTTCTCGGT-CTGCTTGACGACCTCAGCACCAGCCTTCTTCGC 187838 >seq13 Length=45901 Score = 102 bits (112), Expect = 1e-15 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 19044 GAGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGC 19103 || |||||||||||||| || ||||| ||||| | | || || ||||||| || Sbjct 12152 GAAGACAGCATCGGCGGAACAGTGACCTGCGTAATTAGGAATTGTCCAACAGGCCTAGGA 12211 Query 19104 GAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCC 19163 ||||| || || |||||| ||||||| ||| | || ||||||||||| || ||||| Sbjct 12212 GAGCCATGTTTCGACAAGCTCGAGGCTAAGCTTGGTCATGCCATGCTGTCTATTCCGGCA 12271 Query 19164 ACCAAGGGATTCGAGATTGGCAGCGGGTT 19192 ||||| || |||||||| ||| ||| || Sbjct 12272 ACCAAAGGCTTCGAGATCGGCTCCGGCTT 12300 >seq30 Length=80851 Score = 89.7 bits (98), Expect = 6e-12 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 1254380 GGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGC 1254439 ||||||||||||||||| ||| || |||||| || || || | ||| Sbjct 5525 GGTCTGGATCTCGCGCGACGAGATGGTCGACTTCTTGTTGTAGGCGGCAAGCTTGGAGGC 5584 Query 1254440 CTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTT 1254499 ||||||| ||| ||| |||| ||||||||||| |||||||||| || ||| | Sbjct 5585 CTCGGTGGCGACGCGCTCGAAAATGTCGTTGACGAACGAGTTCAGGATGCTCATGGCGCG 5644 Query 1254500 GTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1254538 ||||||||| || ||||||||| ||||||||||| || Sbjct 5645 GTTGGAGATACCAGTGTCGGGGTGGACCTGCTTGAGAAC 5683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107091930742592