Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq20 114 1e-20 seq254 98.7 9e-16 >seq20 Length=105358 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 138501 GTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGG 138560 ||| | ||| ||||| || ||||||| || || ||| ||| ||||| ||| | || Sbjct 11971 GTTGACGACTTGAAACTCGCCGGCCAGCACACGGCGAGAGTAGATGTTTGACGTGTAGGG 12030 Query 138561 CTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCAC 138620 ||| || | ||||| || || |||||||||| ||| | |||||||||||| || || Sbjct 12031 CTCGAAGCACTCGTTATTCCCAAGAATCTGAGACGTAGATGCGGTCGGCATGGGTGCAAC 12090 Query 138621 CAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCA 138680 |||||||||||| || | ||||| | ||| ||||| ||||| | ||| ||||| Sbjct 12091 CAAAAGAGAATTGCGAACGCCGTGCTGTGCGATCTTGTCCTTCAGCGAGGCCCAATCCCA 12150 Query 138681 CAAATCGCTAGGTTTTTTGTTCCACATATCGTACTG 138716 | ||| | ||| | |||||||| |||||||| Sbjct 12151 GAGATCAGTGGGTGTGACGTTCCACAGGTCGTACTG 12186 >seq254 Length=118772 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || || || || || ||||| || | ||||| ||| | | | Sbjct 32552 ATGCAAATCTTTGTCAAGACTCTTACTGGCAAGACTATCACATTGGAAGTCGAATCGAGC 32493 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| |||||||||||||| || || || || || || || Sbjct 32492 GATACCATCGACAACGTGAAATCGAAGATCCAAGACAAGGAGGGTATCCCGCCTGACCAG 32433 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| || || || ||| |||| || ||| | || || || Sbjct 32432 CAGCGTCTCATCTTCGCTGGTAAGCAGTTGGAAGACGGCCGAACGCTCAGCGACTACAAT 32373 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| |||||||| ||||||||| | || |||| || || Sbjct 32372 ATTCAGAAGGAGTCGACACTGCACTTGGTGCTCCGCCTGCGTGGTGG 32326 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 ||||| || || || || || || || || | |||| || | || | || || | Sbjct 32984 ACCGGCAAGACCATCACCCTTGAGGTTGAGTCATCCGATACGATCGACAACGTCAAGTCA 32925 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 ||||| || || || || || || ||||| || || || || ||||| || ||||| || Sbjct 32924 AAGATTCAGGATAAGGAGGGCATCCCTCCGGACCAGCAGCGCTTGATTTTCGCCGGCAAG 32865 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 ||||| |||||| | | | | || ||||| ||||| ||||||||||| || ||||| Sbjct 32864 CAGCTCGAGGATGGCCGTACCCTCTCCGATTACAACATCCAAAAGGAATCCACTCTACAT 32805 Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930 | || |||| | || ||||| Sbjct 32804 CTCGTCCTGCGCCTTCGTGGAGG 32782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449894360737280