Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq230 140 5e-27 seq343 118 2e-20 seq64 118 2e-20 seq20 116 6e-20 seq140 113 7e-19 seq30 93.3 7e-13 seq152 87.8 3e-11 seq354 86.0 1e-10 >seq230 Length=87271 Score = 140 bits (154), Expect = 5e-27 Identities = 223/315 (71%), Gaps = 4/315 (1%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || || || |||||| ||| || ||||||||||||||| | | Sbjct 45785 TGACACCAGCCTTCTGGTAGTCACCGACGCGCTTCTCAAAGAAGTTGGTCTTGCCCGCCA 45726 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | ||||| |||||| | ||| ||||||| | ||||| ||| | | || | Sbjct 45725 GAGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGTACTTGTTGTTACCAA 45666 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | ||| || ||||| || || || || |||||||||||||||||||| || | ||||| Sbjct 45665 GGGACAGCAGAAGGCGATCAGCCACAAACTCAATGTACTGGCACATGAGTGCAGAGTTCA 45606 Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130 |||| | || || ||| || | || ||| ||||| ||||||||| ||||||||| Sbjct 45605 TGCCAAGCAGAGCGCAGGGGAGAGCATCTGTGAGGAACTCCTTCTCGATCGCGACGGCCT 45546 Query 794131 CGATGATGATCTGCCTGGGC-ACGT-CGGACGACGGCTTGTCGACGAGCATCGTGTAGAG 794188 | ||||||| |||||| | | | | || ||| ||| | ||| | | | |||| Sbjct 45545 CAGTGATGAT-GGCCTGGACGGCATCCTTACTGGGGCGTGT-GTTGAGGAGAGAGAAGAG 45488 Query 794189 CAGGCAGGCAAAGTC 794203 |||||||||||||| Sbjct 45487 GAGGCAGGCAAAGTC 45473 Score = 86.0 bits (94), Expect = 1e-10 Identities = 135/191 (71%), Gaps = 3/191 (2%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||||||| ||||| ||||| || ||| |||||||| ||||| |||||| Sbjct 45462 CCCTCGTCGCGAGAGATCAGCTCGTTTGAGAATGTGAGACCGGGCATCAGGCCACGCTTC 45403 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || | ||| ||||||| ||| ||| ||| ||||||||||| |||||||| || Sbjct 45402 TTCAACCAGAAGATGGACGCGAACGAGCCGCTGAAGAAGATGCCCTCAACGGCGGCGAAT 45343 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 |||| || || | ||| || ||| || | | | || |||||| || | ||||| Sbjct 45342 GCGACCAGACGGTTGGCGAA--GGTCGAGTTCTTGTCTG-AGATCCATTTGAGGGCCCAG 45286 Query 794521 TCTGCCTTTTT 794531 || ||||| || Sbjct 45285 TCAGCCTTCTT 45275 >seq343 Length=64946 Score = 118 bits (130), Expect = 2e-20 Identities = 95/115 (83%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 || |||||||| |||||||||||| |||| ||||| | || |||||||| || ||||| Sbjct 20288 GCGGCCAACTATCTCGACATCAAGGCCCTTCTCGACGTCGGCTGCAAGACAGTTGCCAAT 20347 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761 | |||||||||||||| ||||| || ||||||||||| || |||||| || ||| Sbjct 20348 ATGATCAAGGGCAAGTCTCCCGACGAGATCCGCAAGACGTTCAACATCCAGAACG 20402 >seq64 Length=246216 Score = 118 bits (130), Expect = 2e-20 Identities = 191/270 (71%), Gaps = 5/270 (2%) Strand=Plus/Plus Query 2411386 TCAATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGTCCTTGGTGAGGCCCGGCACC 2411445 |||||||||||| | | ||| || |||||| |||||| ||||| || || || ||| Sbjct 187573 TCAATCTTGGAGTCAGGATCGGAGGAGCTCATTTTGCCG-CCTTGCAGA--CCGGGGACC 187629 Query 2411446 AGCGGGTTGAGCAGGTGGATGCGCTTGCGGTAGCCCAGCGCCGGCAGGTGGTCGCGCGCA 2411505 | ||||| | || ||| ||||| |||||| ||| || ||| ||| || Sbjct 187630 ATGGGGTTCATCAAGTGAGCGCGCTCCTTGTAGCCGAGCTTGGGAAGGGCGTCTTTGGCG 187689 Query 2411506 AAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGC 2411565 | ||| |||||||| ||||| || || || |||||| | ||||| ||||||| |||| Sbjct 187690 AGGGCGAAGATCTTACGCTGATCTACACCACCGAACTGGACATCGACATCGAGGTACTGC 187749 Query 2411566 TCGTCGAGGGCCTGCATGAGCGGGTAGACGAGGTTGCTGAGCGGCGGGTT-GCGGTCCAT 2411624 ||||| || ||||||||||| ||||||| || || | |||| ||| |||| | Sbjct 187750 TCGTCAAGAGCCTGCATGAGTGGGTAGAGAAGACCACTCAAAGGCGCGTTCTCGGT-CTG 187808 Query 2411625 CTTGACCACCTGGGCGGCGGCCTTTTGCGC 2411654 |||||| |||| || | ||||| | ||| Sbjct 187809 CTTGACGACCTCAGCACCAGCCTTCTTCGC 187838 >seq20 Length=105358 Score = 116 bits (128), Expect = 6e-20 Identities = 205/299 (69%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 || || ||||| || ||||||| ||| |||| || |||||||| | || ||||| || Sbjct 13025 TGATCAACATAACGAGCCGTGTTGTTGTAGACACGAAGCATGGGAATGAGACCGTTCGAT 13084 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 || |||||||| | | ||| | ||| | ||| || | ||| || | || Sbjct 13085 GTACCATTGGTGCCACCGATGTAAGAGCCAGTGGCACGGATACGGTGAACGTTGAGACCA 13144 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 || ||||| || | ||||||||| | || || | || || || ||||||||||| || Sbjct 13145 ATACCGCCAGCGGTCTTGGAGATCAAGGCACAAGTCTTGAGTGTGTCGTAGATGCCATCA 13204 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 || ||| |||||||||| | || ||||| ||||| |||| || | ||||| Sbjct 13205 ATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGACGACATTTGAGGATTTGGTGTGCCC 13264 Query 2073781 GCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGT 2073839 ||||||||||| || |||| || ||| | ||| ||| |||||| ||||| || Sbjct 13265 GCATTGAAGAGGGTAGGCGAAGCGTGTGTGAAGTACTTTTGCGACATGTAGTCGTAAGT 13323 >seq140 Length=158211 Score = 113 bits (124), Expect = 7e-19 Identities = 288/434 (66%), Gaps = 6/434 (1%) Strand=Plus/Plus Query 2019003 GACGGCAACATGCCCAACCTCTTGCTGGCGGGCCCGCCCGGCACGGGCAAGACCACGAGC 2019062 ||||| ||||||||| | | | | |||| ||| || | |||||||||||| Sbjct 148479 GACGGAAACATGCCCCATGTGATCATCTCGGGTATGCCTGGTATCGGCAAGACCACGTCG 148538 Query 2019063 ATCGCGTGCCTGGCGCGCGTGCTCTTGGGCGCGGCCGCCGACGAGGCCGTGCTCGAACTC 2019122 || |||||| || ||| || | |||| || | | || ||||| || |||||| Sbjct 148539 ATTCTGTGCCTTGCACGCCAACTGCTCGGCGATGCATACAAGGAAGCCGTCCTAGAACTC 148598 Query 2019123 AATGCGTCAGACGAGCGCGGCGTGGACGTCGTGCGTAGAATC--ATCAAGCATCACGCTT 2019180 ||||| || || |||||||| | || ||||| ||| |||| || ||| | || Sbjct 148599 AATGCCTCCGATGAGCGCGGTATCGATGTCGTCCGT--AATCGGATAAAGGGTTTTGCGC 148656 Query 2019181 CGAAAAGAATCGACCTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACT 2019240 ||| | | || ||||| || ||| | || ||| || ||||||| || ||||| ||| Sbjct 148657 AGAAGAAAGTCACGCTGCCACCGGGCAGGCAAAAGCTGGTCATCCTGGACGAGGCAGACA 148716 Query 2019241 GCCTTACGTCGGCGGCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGA 2019300 || | ||| | || || || || | ||| ||| ||||| | |||| || | Sbjct 148717 GCATGACGAGCGGTGCACAACAAGCGTTGCGAAGGACGATGGAGATTTACAGTGCGACTA 148776 Query 2019301 CGCGGTTTGCGCTGGCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTT 2019360 |||| || ||| | || |||||| |||| | | ||||||| | || ||| | | Sbjct 148777 CGCGATTCGCGTTTGCATGCAACCAGTCGAACAAGATCATCGAGCCGCTGCAGTCAAGAT 148836 Query 2019361 GCGCCATCTTGCGCTTTGCGCGCCTCACCGACGCCCAGATCG-CCGCGCGTCTGCGCGAG 2019419 |||||||| |||| | ||| || ||||| || || || ||| ||| | | || || Sbjct 148837 GCGCCATCCTGCGATATGCTCGTCTCACGGATGCACAAGTCGTGCGCCGGATTATGC-AG 148895 Query 2019420 ATTATCGACGCCGA 2019433 |||||||| || || Sbjct 148896 ATTATCGAGGCAGA 148909 >seq30 Length=80851 Score = 93.3 bits (102), Expect = 7e-13 Identities = 118/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 1485546 GGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCCAGGCG-GCCGG 1485604 ||||||||||||||| | ||| || |||||| || ||| || || | || Sbjct 5525 GGTCTGGATCTCGCGCGACGAGATGGTCGACTTCTTGTT-GTAGGCGGCAAGCTTGGAGG 5583 Query 1485605 CCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGATT 1485664 |||||||| ||| ||| |||| ||||||||||| |||||||||| ||| ||| | Sbjct 5584 CCTCGGTGGCGACGCGCTCGAAAATGTCGTTGACGAACGAGTTCAGGATGCTCATGGCGC 5643 Query 1485665 TGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 ||||||||| || ||||||||| ||||||||||| || Sbjct 5644 GGTTGGAGATACCAGTGTCGGGGTGGACCTGCTTGAGAAC 5683 >seq152 Length=430431 Score = 87.8 bits (96), Expect = 3e-11 Identities = 180/262 (69%), Gaps = 7/262 (3%) Strand=Plus/Plus Query 653619 TCAAGATCGTCACCCGCGCCATGCGCCAGCCCGAGGTGGGCGACAAACTGTCGTCGCGCC 653678 ||||||| |||| || | |||| ||||| | ||||||||| | || || || | Sbjct 18754 TCAAGATGCTCACACGACAAACCCGCCGCCCCGAACTCGGCGACAAATTCTCCTCTCGTC 18813 Query 653679 ACGGGCAAAAGGGCACCGTGGGCAGCGTGCGCTCGACCGAG--GAAATGCCGTGGTCGCC 653736 | || ||||||||||| ||| | | || || ||| || || ||||| | || | Sbjct 18814 ATGGTCAAAAGGGCACAACAGGCCTCAT-CG-TCAACCAAGAAGACATGCCCT--TCAAC 18869 Query 653737 GCGCGGGGGCGCCACGCCCGACATCGTCATCAACCCGCACGCCATCCCGTCGCGCATGAC 653796 | || ||| | ||||||||||| |||| ||||| |||| |||| ||||||||||| Sbjct 18870 GA-CGACGGCATCTCGCCCGACATCATCATGAACCCACACGGTTTCCCCTCGCGCATGAC 18928 Query 653797 CATGGGCAAGATGATGGAGGCCCTCCTGGGCAAGGTGGCCTGCCGCGAGGGCTACGTGGG 653856 | ||||| |||||||| |||| ||||| | | | || | | ||| | | | Sbjct 18929 AGTCGGCAAAATGATGGAACTCCTCTCCGGCAAAGCCGGCGTCCTCAACGGCACCCTCGA 18988 Query 653857 CGACGGCACCCCGTTTGGCGGC 653878 |||||||| |||| |||||| Sbjct 18989 ATACGGCACCGCGTTCGGCGGC 19010 >seq354 Length=75842 Score = 86.0 bits (94), Expect = 1e-10 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 429633 ACCTTCCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGCGACGAG 429692 || ||||| |||||| || | || ||| | | |||||||||||||| |||||||||||| Sbjct 36821 ACTTTCCGCCTCAACTTGTCAGTCACGTCCCCATACAACGCCGACTTCGACGGCGACGAG 36880 Query 429693 ATGAACCTGCACGTGCCCCA 429712 |||||||| |||||||| || Sbjct 36881 ATGAACCTTCACGTGCCGCA 36900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916185128252864