Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq275 100 2e-16 seq254 93.3 3e-14 seq241 84.2 1e-11 >seq275 Length=365033 Score = 100 bits (110), Expect = 2e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 34750 TCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGA 34809 |||||| | || | ||||||| ||| | ||| ||||||||| ||||| ||||| || Sbjct 273865 TCCTCCACGCAGACGGAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 273806 Query 34810 TAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869 ||| |||| |||| || || ||||| ||||||||||| || || |||||||| | || Sbjct 273805 GAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGG 273746 Query 34870 CACCCCCTCCTTGTC 34884 | ||||||||||| Sbjct 273745 AATGCCCTCCTTGTC 273731 >seq254 Length=118772 Score = 93.3 bits (102), Expect = 3e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| ||||| || ||| |||| |||| || || ||||| |||||||| Sbjct 33100 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAA 33159 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||||| || |||||||| | || | ||||||||||| Sbjct 33160 GATCAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTGTC 33198 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 10/197 (5%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||||||||| || ||||| || | || | || |||| ||||| || ||||| Sbjct 32361 CTCCTTCTGAATATTGTAGTCGCTGAGCGTTCGGCCGTCTTCCAACTGCTTACCAGCGAA 32420 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACG-- 34903 ||| || || |||||||| |||| | ||||||||||| | || || ||| ||| Sbjct 32421 GATGAGACGCTGCTGGTCAGGCGGGATACCCTCCTTGTCTTGGATCTTCGATTTCACGTT 32480 Query 34904 ---GATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTC 34960 |||| ||||| | || ||||| || | || || ||||| || || || ||| Sbjct 32481 GTCGATGGTATCGCTCGAT-----TCGACTTCCAATGTGATAGTCTTGCCAGTAAGAGTC 32535 Query 34961 TTTACAAAGATCTGCAT 34977 || |||||||| ||||| Sbjct 32536 TTGACAAAGATTTGCAT 32552 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| ||||||||| ||||| ||||| || || | || | || Sbjct 32569 AGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTACGGCCGTCT 32628 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || || || || ||||| ||||| || | || | ||||||||||| Sbjct 32629 TCGAGCTGCTTGCCAGCAAAAATGAGTCGCTGCTGATCCGGGGGAATACCCTCCTTGTCC 32688 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | |||| || | ||| || || | || || ||| Sbjct 32689 TGAATCTTCGACTTCACGTTGTCAATCGTGTCTGAAGACTCAACCTCCAATGTGATAGTC 32748 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||| ||||| || ||||||||||| Sbjct 32749 TTGCCAGTGAGTGTCTTGACGAAGATCTGCAT 32780 >seq241 Length=242151 Score = 84.2 bits (92), Expect = 1e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | || ||||||||| ||||| ||||| || || |||| | || Sbjct 46848 AGGACCAAGTGGAGCGTTGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCGTCC 46789 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| ||||||||||||| || |||||||| | || | ||||||||||| Sbjct 46788 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 46730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325690513636544