Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq230 194 2e-44 seq20 174 2e-38 seq254 116 4e-21 seq241 109 5e-19 seq275 86.0 6e-12 >seq230 Length=87271 Score = 194 bits (214), Expect = 2e-44 Identities = 364/522 (70%), Gaps = 21/522 (4%) Strand=Plus/Minus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || ||| || |||||||| |||||||| ||||| || |||||| ||| || ||||| | Sbjct 45772 CTGGTAGTCACCGACGCGCTTCTCAAAGAAGTTGGTCTTGCCCGCCAGAGAGATGTTCTC 45713 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACG--AGC 120468 ||| || ||||| |||||| | ||||| |||| || | || | | | || || Sbjct 45712 CATGAAGTCGAAGGGGTTGGTGGCGTTGTAGTACTT--GTTGTTACCAAGGGACAGCAGA 45655 Query 120469 AGTCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGC-GCGTTCATGCCCAGCAA 120527 || || || || |||||||||||||||| ||||||| | ||| | ||||||||| |||| Sbjct 45654 AGGCGATCAGCCACAAACTCAATGTACTGGCACATG-AGTGCAGAGTTCATGCCAAGCAG 45596 Query 120528 CGCCACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACAT 120587 || || | || |||| ||||||||||| || | || ||||| ||| || Sbjct 45595 AGCGCAGGGGAGAGCATCTGTGAGGAACTCCTTCTCGATCGCGACGGCCTCAGTGATGAT 45536 Query 120588 GGC---GA--GCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGG 120642 ||| || |||| | | ||| | |||||| || | | | | || ||| Sbjct 45535 GGCCTGGACGGCATCCTTA--CTGGGG--CGTGTGTT-GAGGAGAGA---GAAGAGGAGG 45484 Query 120643 CACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGG 120702 || |||||||| ||||||| |||||||||||| || ||||||||||| || || || Sbjct 45483 CAGGCAAAGTCAGTGTGCATGCCCTCGTCGCGAGAGATCAGCTCGTTTGAGAATGTGAGA 45424 Query 120703 CCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAAC 120762 |||||||| | ||| | |||| | |||| |||| || || ||| ||||| Sbjct 45423 CCGGGCATCAGGCCACGCTTCTTCAACCAGAAGATGGACGCGAACGAGCCGCTGAAGAAG 45364 Query 120763 ACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTG-CTGTC 120821 | |||||| ||| ||| || ||||||| || | ||| || |||| ||||| ||| Sbjct 45363 ATGCCCTCAACGGCGGCGAATGCGACCAGACGGTTGGCGAAGGTCGAGTTCTTGTCTG-A 45305 Query 120822 GATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGG 120863 |||||| || | |||||| || ||||| ||||| | ||| || Sbjct 45304 GATCCATTTGAGGGCCCAGTCAGCCTTCTTGCGAATGCATGG 45263 >seq20 Length=105358 Score = 174 bits (192), Expect = 2e-38 Identities = 973/1538 (63%), Gaps = 51/1538 (3%) Strand=Plus/Plus Query 148260 TTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGA-TACACGTTGCTCGTAAACGG 148318 || || || |||||||||||||| ||||| || || ||| || | ||| ||| | || Sbjct 11972 TTGACGACTTGAAACTCGCCGGCCAGCACACGGCG-AGAGTAGATGTTTGACGTGTAGGG 12030 Query 148319 TTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTAC 148378 || || ||||||| || || | |||||| | || | ||| || |||||| || || Sbjct 12031 CTCGAAGCACTCGTTATTCCCAAGAATCTGAGACGTAGATGCGGTCGGCATGGGTGCAAC 12090 Query 148379 CAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCA 148438 || || || ||||| | ||| | | | || ||| |||||| | ||||| ||||| Sbjct 12091 CAAAAGAGAATTGCGAACGCCGTGCTGTGCGATCTTGTCCTTCAGCGAGGCCCAATCCCA 12150 Query 148439 GAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCT 148498 ||| | ||||| |||||||||| ||||||||| || ||| || || Sbjct 12151 GAGATCAGTGGGTGTGACGTTCCACAGGTCGTACTGAAGCTGGCCTTGGGAGATAGGAGA 12210 Query 148499 GCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGC 148558 || ||||| | ||| || || || || || | ||||| | ||| || Sbjct 12211 ACCTTCGTATGTCGCGTAAGGGCCCAGCTCCTTAGCAATGTCGCAAGATGAGGTGAGGGC 12270 Query 148559 GCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCGCTT-TCGT 148617 ||| ||| || |||||| || || |||||||| | ||| | || ||| Sbjct 12271 CGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTTCTTGGCCT-CGGGCGACTCGA 12329 Query 148618 ACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCC 148677 | |||| || || || || || || || || ||||| || || | || || || | Sbjct 12330 AGGGCAAGCGTAGTGCCAGGAAGGCATCAGCGAGACCCTGAACACCGAGCCCGATAGGTC 12389 Query 148678 GGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCGGATAGTGGTTGCGGTCGATGATCT 148737 ||| | ||| | | || || ||| | || ||||||||| |||||||||| Sbjct 12390 TGTGACGGAAATTGCTGCGACGTGCTTCCTCTACTGGGTAGTGGTTGACTTCGATGATCT 12449 Query 148738 TGT-CAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGC------AATTCAAAATC- 148789 ||| |||| ||||| || || | || | | | | || || ||||| || Sbjct 12450 TGTTCAAG-TTGCGGGTAACAACTTGGGTGACTTCGTGGAGTTTGTTGAAGTCAAACTCC 12508 Query 148790 --GTACTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACACGGCC 148847 | ||| | || |||| | || | |||| ||||| || || || || || Sbjct 12509 CCGCGCTTATAGTCCACGAACGAGGGGAGC---GCGAGCGAGGCGAGGTTACATACCGCT 12565 Query 148848 GTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATT---GCTGCATTTGATC 148904 |||||| || || ||||||| |||||||||| ||| || || ||||| || | Sbjct 12566 ACCTCATCAGGAGCAGTGTACTCGACGATCTCGGTGCAGAGGTTAGAGCTGCGAATGGTA 12625 Query 148905 ACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGT 148964 || | |||||||| |||||||| | |||||| || || ||||| |||||| | || Sbjct 12626 ---CCAAGATTCTTTTGGTTGCTCTTCCGGTTGCAAGCATCTTTGTAGAGCATGAAAGGG 12682 Query 148965 CCGCCAGTTTCCACCTGCGTTTCCACTATG--AACCGATGCAGGTCCTGCGCGCGCACTT 149022 ||||| ||| ||| | || | ||| | | | || | || ||||| || Sbjct 12683 TTACCAGTCTCCGTCTGAGCCTCAAGGATGGCATACCAG--AGCTTTTGGGCGCGAACAG 12740 Query 149023 GCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCGCTCGAACGCCTCGCCGT 149082 || | || || | ||||| | || ||| ||||||| | || || | Sbjct 12741 TCTCCCGACCACGGTTGTCACGTTCGTAACGATGGTAGAGCTCCTCGAACTCATCACCAT 12800 Query 149083 AGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGT 149142 | ||| | ||||| ||| | || ||||| | |||| |||| | || | | | | Sbjct 12801 ACACGTCGGCAAGACCAGGGGCTTCGTTGGGGCAGAATAGCGTCCACTCACCATTCTCCT 12860 Query 149143 ACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCGC----- 149197 ||||||||||| || || || || | ||| || ||||| | |||||| || || Sbjct 12861 GAACGCGCTTCATGAAAAGGTCTGGAATCCATAGTGCGTAGAAGAGGTCACGGGCACGAA 12920 Query 149198 CTTGCAGTCTTCGGCGCCCATGTTGCG-GCGCAGGTTGAGCACGCTGAATATGTCCGCGT 149256 ||| | |||| | ||||| | | ||| || | || | | ||| | || || | Sbjct 12921 CTTCC--TCTTTG----CCATGGTTCTTGCGAAGATCAAGGAAACCGAAGACATCAGCAT 12974 Query 149257 GCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTTG---CCGCCCTGGTCGACGT 149313 |||| ||||| | ||| | |||| ||||| ||||||| || || || || || | Sbjct 12975 GCCATGGCTCCAGGTAGATGGCGAAGGCGCCAGGGCGCTTGTTGCCACCTTGATCAACAT 13034 Query 149314 GGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTG---GCAGTGCCGT 149370 || || ||||||| | || |||| ||| || |||| || | | || || | Sbjct 13035 AACGAGCCGTGTTGTTGTAGACACGAAGCATGGG---AATGAGACCGTTCGATGTACCAT 13091 Query 149371 TAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGC 149430 | || | ||| | ||| || || | ||| ||||||| || || |||| Sbjct 13092 TGGTGCCACCGATGTAAGAGCCAGTGGCACGGATACGGTGAACGTTGAGACCAATACCGC 13151 Query 149431 CGCCGTACTTTGAGATGGCCGCGCA-GTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTG 149489 | || ||| ||||| || || ||| ||| || ||||||||| || |||||| Sbjct 13152 CAGCGGTCTTGGAGATCAAGGCACAAGTCTT-GAGTGTGTCGTAGATGCCATCAATGCTG 13210 Query 149490 TCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCG 149549 || ||||||| | || ||||| || ||||||| ||| | ||||| || | Sbjct 13211 TCCTCCTTCATGTCGATGAGGAAGCAGGACGACATTTGAGGATTTGGTGTGCCCGCATTG 13270 Query 149550 AACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTACGACTCGAGC 149609 || | ||| || |||||||| || || || || ||| ||||| | ||| | | Sbjct 13271 AAGAGGGTAGGCGAAGCGTGTGTGAAGTACTTTTGCGACATGTAGTCGTAAGTCTCAATC 13330 Query 149610 ACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGT 149669 | || |||| || ||||||||||| | || |||||||||| ||| || || || Sbjct 13331 GCCTTCTCGATGTTCTCTCCATGGATGCCGACAGCCACGCGCATCAACATGTGTTGTGGG 13390 Query 149670 CGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCA 149729 ||||| || || ||| || ||| | ||| | || || |||||| ||||| Sbjct 13391 CGCTCGGCAACCTTGCCGTTGATGCGGAGAAGGTATGAGCGCTCGAGCGTCTTGAAGCCA 13450 Query 149730 AAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGC 149767 ||| ||| ||||| ||||| ||| | | | | ||||| Sbjct 13451 AAGAACTGGTAGTTGAAGTCACGGTCATAGACGATGGC 13488 >seq254 Length=118772 Score = 116 bits (128), Expect = 4e-21 Identities = 133/176 (76%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| ||| | ||| ||| | ||||| ||||||||||| Sbjct 33095 GTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCA-TCCTCAAGCTGCTTGCC 33153 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || ||||||||||| |||||||| || |||||||| |||||| ||| Sbjct 33154 GGCGAAGATCAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTGCTCTT 33213 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCA 133638 || | || | ||||||| | |||||| || | ||||| ||| |||||||||| Sbjct 33214 GACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATGGTCTTGCCGGTCA 33269 Score = 107 bits (118), Expect = 2e-18 Identities = 134/181 (74%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||||| ||||| || || || || ||||||||| | || | | | |||||||||| Sbjct 32805 ATGTAGAGTGGATTCCTTTTGGATGTTGTAATCGGAGAGGGTACGGCCA-TCCTCGAGCT 32863 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| ||| |||| | ||||||||||| ||||||||||| ||||| || |||| Sbjct 32864 GCTTGCCGGCGAAAATCAAGCGCTGCTGGTCCGGAGGGATGCCCTCCTTATCCTGAATCT 32923 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 || ||||| | || | ||| |||| | ||| || || | ||||| ||| ||||||| Sbjct 32924 TTGACTTGACGTTGTCGATCGTATCGGATGACTCAACCTCAAGGGTGATGGTCTTGCCGG 32983 Query 133636 T 133636 | Sbjct 32984 T 32984 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 |||||||| ||||| || ||||| || | || ||| ||| ||||||||||||| Sbjct 32584 GTGGACTCCTTCTGGATGTTGTAGTCTGAGAGAGT--ACGGCCGTCTTCGAGCTGCTTGC 32641 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || ||||||| |||||||| || || || || || |||||||| ||||| || Sbjct 32642 CAGCAAAAATGAGTCGCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAATCTTCGACT 32701 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| |||||| | | ||| || || | |||| || ||||| || || | Sbjct 32702 TCACGTTGTCAATCGTGTCTGAAGACTCAACCTCCAATGTGATAGTCTTGCCAGTGAGTG 32761 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 32762 TCTTGACGAAGATCTGCAT 32780 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 || ||||| ||||| |||||||| |||| | ||| || || || || | |||||| | Sbjct 32356 GTCGACTCCTTCTGAATATTGTAGTCGCTGAGCGTTCGGCCG--TCTTCCAACTGCTTAC 32413 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | ||||| ||||||||||| || ||||| || |||||||| |||||| | Sbjct 32414 CAGCGAAGATGAGACGCTGCTGGTCAGGCGGGATACCCTCCTTGTCTTGGATCTTCGATT 32473 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | || ||| | | || || || | |||| || ||||| || |||| Sbjct 32474 TCACGTTGTCGATGGTATCGCTCGATTCGACTTCCAATGTGATAGTCTTGCCAGTAAGAG 32533 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || || ||||| Sbjct 32534 TCTTGACAAAGATTTGCAT 32552 >seq241 Length=242151 Score = 109 bits (120), Expect = 5e-19 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || ||||| ||| || ||| |||||||||||||||||| Sbjct 46833 GTTGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCGTCCTCGAGCTGCTTGCCG 46774 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || | ||||||||||| || || ||||| |||||||| |||||| |||| Sbjct 46773 GCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTG 46714 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 | | || | ||||||| | |||||| |||| ||||| || |||||||| Sbjct 46713 ACATTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATCGTCTTGCCGGT 46661 >seq275 Length=365033 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| ||||| || ||||| ||| | ||| | | | |||||||| Sbjct 273843 AAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA-TCCTCGAG 273785 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 133567 ||||||||| ||| | ||||| ||||||||||| || || ||||| |||||||| Sbjct 273784 CTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 273731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483417319370240