Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq20 178 1e-39 seq230 107 2e-18 >seq20 Length=105358 Score = 178 bits (196), Expect = 1e-39 Identities = 971/1533 (63%), Gaps = 35/1533 (2%) Strand=Plus/Plus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGA-TACACATTGCTAGTGAAAGG 146951 ||||| |||||||||||||| ||||||||||| | |||| || | || ||| | || Sbjct 11972 TTGACGACTTGAAACTCGCCGGCCAGCACACGGC-GAGAGTAGATGTTTGACGTGTAGGG 12030 Query 146952 CTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCAC 147011 ||| || |||| ||||| || | || || | ||| | |||||| |||||| || || Sbjct 12031 CTCGAAGCACTCGTTATTCCCAAGAATCTGAGACGTAGATGCGGTCGGCATGGGTGCAAC 12090 Query 147012 CAACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCA 147071 ||| | ||||| || | |||| | ||| |||||||||| | ||| ||||| Sbjct 12091 CAAAAGAGAATTGCGAACGCCGTGCTGTGCGATCTTGTCCTTCAGCGAGGCCCAATCCCA 12150 Query 147072 CATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACT 147131 | | ||| || |||||||||| ||||||||| ||| ||| | | ||| Sbjct 12151 GAGATCAGTGGGTGTGACGTTCCACAGGTCGTACTGAAGCTGGCCTTGGGAGATAGGAGA 12210 Query 147132 GCCAGCGAACGTAGTGT-AGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGCG 147190 || || | || | || || || | | || || | || || || ||| | Sbjct 12211 ACCTTCGTATGTCGCGTAAGGGCCCAGCTC-CTTAGCAATGTCGCAAGATGAGGTGAGGG 12269 Query 147191 CTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGT 147250 | | | ||| ||||| ||| ||| || |||| || | || || |||| Sbjct 12270 CCGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTTCTTGGCCTCGGGCGACTCGA 12329 Query 147251 AAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTC 147310 | |||| || || || |||||||| || | |||||| | ||||| |||||||||| Sbjct 12330 AGGGCAAGCGTAGTGCCAGGAAGGCATCAGCGAGACCCTGAACACCGAGCCCGATAGGTC 12389 Query 147311 GATGCTTTTCGTTGCTGCGCTTCGCGCT--CGCTATGGGATAGTGGTTGCGATCAATAAT 147368 || |||||||| || ||| | ||| || ||||||||| || || || Sbjct 12390 TGTGACGGAAATTGCTGCG--ACGTGCTTCCTCTACTGGGTAGTGGTTGACTTCGATGAT 12447 Query 147369 CTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGT 147428 |||||| | ||| || ||||||| || | | | |||||| | ||| ||| | Sbjct 12448 CTTGTTCAAGTTGCGGGTAACAACTTGGGTGACTTCGTGGAGTTTGTTGAAGTCAAACTC 12507 Query 147429 CCCG-TCTTCGA---CACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGG 147484 |||| ||| | |||| ||| | || | |||| || || || || || || | Sbjct 12508 CCCGCGCTTATAGTCCACGAACG-AGGGG---AGCGCGAGCGAGGCGAGGTTACATACCG 12563 Query 147485 CCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTT---GCTGCATTTTA 147541 | ||| || | | |||||| ||||| |||| ||| ||||| ||||| | Sbjct 12564 CTACCTCATCAGGAGCAGTGTACTCGACGATCTCGGTGCAGAGGTTAGAGCTGC---GAA 12620 Query 147542 TGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACG 147601 || || | ||| | || ||||| ||||| ||||| || |||||| |||||||| | | Sbjct 12621 TGGTACCAAGATTCTTTTGGTTGCTCTTCCGGTTGCAAGCATCTTTGTAGAGCATGAAAG 12680 Query 147602 GTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATGCAGGTCCTGCGCTCGCA 147658 | || ||||| || | |||| ||| | ||| || | || || || | Sbjct 12681 GGTTACCAGTCTCCGTCTGAGCCTCAAGGATGGCATACC---AGAGCTTTTGGGCGCGAA 12737 Query 147659 CCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGC 147718 | || |||| ||| || |||||| || | ||| | | ||| ||||| || | Sbjct 12738 CAGTCTCCCGACCACGGTTGTCACGTTCGTAACGATGGTAGAGCTCCTCGAACTCATCAC 12797 Query 147719 CGTAGCAATCGGCAAGGCC-GGGACACTGATGCGGACACATCAGCGACCACATGTCGTCC 147777 | || |||||||| || ||| | | || || || | |||| |||| | | | Sbjct 12798 CATACACGTCGGCAAGACCAGGGGCTTCGTTG-GGGCAGAATAGCGTCCACTCACCATTC 12856 Query 147778 GCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCT 147837 | | |||||| ||| || || || || | ||| || ||||| | || || || || Sbjct 12857 TCCTGAACGCGCTTCATGAAAAGGTCTGGAATCCATAGTGCGTAGAAGAGGTCACGGGCA 12916 Query 147838 TTGCAATCCTCGGCGCCCATGTTGCGTTTCAA-ATTAAGCACGCTATAGATGTCGGCGTG 147896 ||||| | ||||| | | | || || ||| | | ||| || || || Sbjct 12917 CGAACTTCCTCTTTG-CCATGGTTCTTGCGAAGATCAAGGAAACCGAAGACATCAGCATG 12975 Query 147897 CCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGACATG 147953 ||| || || | ||||| ||| | || || ||| || || || || || |||| Sbjct 12976 CCATGGCTCCAGGTAGATGGCGAAGGCGCCAGGGCGCTTGTTGCCACCTTGATCAACATA 13035 Query 147954 GCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGT 148013 || || ||||||| | || || | |||||| || ||| ||| || || ||||| Sbjct 13036 ACGAGCCGTGTTGTTGTAGACACGAAGCATGGGAATGAGACCGTTCGATGTACCATTGGT 13095 Query 148014 GGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCCGCC 148073 | | ||| | ||| ||| || | ||| ||||| | ||||| ||||| | Sbjct 13096 GCCACCGATGTAAGAGCCAGTGGCACGGATACGGTGAACGTTGAGACCAATACCGCCAGC 13155 Query 148074 GTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGCTGTCGTT 148133 | ||| || || || ||| | ||| ||||||||| || |||||||| | Sbjct 13156 GGTCTTGGAGATCAAGGCACAAGTCTTGAGTGTGTCGTAGATGCCATCAATGCTGTCCTC 13215 Query 148134 TTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAG 148193 || | | | | | || || || ||||||| ||| | | || ||||| ||| || Sbjct 13216 CTTCATGTCGATGAGGAAGCAGGACGACATTTGAGGATTTGGTGTGCCCGCATTGAAGAG 13275 Query 148194 GGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATAGCGTC 148253 ||| || ||||| || || | ||||| ||| | || |||||||| || | Sbjct 13276 GGTAGGCGAAGCGTGTGTGAAGTACTTTTGCGACATGTAGTCGTAAGTCTCAATCGCCTT 13335 Query 148254 TTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTC 148313 ||||||| || || || ||||| | || |||||||| | |||||| ||||| || || Sbjct 13336 CTCGATGTTCTCTCCATGGATGCCGACAGCCACGCGCATCAACATGTGTTGTGGGCGCTC 13395 Query 148314 GGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAAAGTA 148373 |||||| | |||||| |||||| ||| ||||| || ||| | |||||| | Sbjct 13396 GGCAACCTTGCCGTTGATGCGGAGAAGGTATGAGCGCTCGAGCGTCTTGAAGCCAAAGAA 13455 Query 148374 CTTGTAATCAAAATCTAGCTCGTAAGCGATGGC 148406 || ||| | || || | || || ||||||| Sbjct 13456 CTGGTAGTTGAAGTCACGGTCATAGACGATGGC 13488 >seq230 Length=87271 Score = 107 bits (118), Expect = 2e-18 Identities = 341/520 (66%), Gaps = 19/520 (4%) Strand=Plus/Plus Query 46758 GTGCCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCG-AGAGCGAGACCGC 46816 || |||||| ||||||| ||||| | |||||| | || |||||| ||| | ||| | | Sbjct 45260 GTTCCATGCATTCGCAAGAAGGCTGACTGGGCCCTCAAATGGATCTCAGA-CAAGAACTC 45318 Query 46817 CACGCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAG 46876 || | ||| | || |||| |||||||| || || ||| | || || ||| Sbjct 45319 GACCTTCGCCAACCGTCTGGTCGCATTCGCCGCCGTTGAGGGCATCTTCTTCAGCGGCTC 45378 Query 46877 TTTTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAA 46936 || || |||| || | | || | ||| | ||||| || || || ||| || Sbjct 45379 GTTCGCGTCCATCTTCTGGTTGAAGAAGCGTGGCCTGATGCCCGGTCTCACATTCTCAAA 45438 Query 46937 CGAGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCTCTATTACAAGAC 46996 |||| ||||||| |||||||| || | ||||| |||||||| || ||| | | | Sbjct 45439 CGAGCTGATCTCTCGCGACGAGGGCATGCACACTGACTTTGCCTGCCTCCTCTTCT---C 45495 Query 46997 GCGCGTGAAT----GAGAAATTAAACTCGGACACGATCCTGAGCATGTTTAGGGAGGCGG 47052 | | | || | | ||| ||| | ||| | ||| | | ||||| | Sbjct 45496 TCTCCTCAACACACGCCCCAGTAA----GGATGCCGTCCAGGCCATCATCACTGAGGCCG 45551 Query 47053 TGAGCATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACG 47112 | ||||| |||||||| | || | || || ||| ||| |||| ||||||||| Sbjct 45552 TCGCGATCGAGAAGGAGTTCCTCACAGATGCTCTCCCCTGCGCTCTGCTTGGCATGAACT 45611 Query 47113 CA-CAGTCTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGG- 47170 | || || |||||| | || |||||||||||||| ||||| || || || || || Sbjct 45612 CTGCACTC-ATGTGCCAGTACATTGAGTTTGTGGCTGATCGCCTTCTGCTGTCCCTTGGT 45670 Query 47171 -ACAACCGAAATATTTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCG 47229 ||||| || || | || || || || || || || ||| | ||||| || || | Sbjct 45671 AACAAC--AAGTACTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTGG 45728 Query 47230 AGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269 |||||| ||||| || || ||||| || ||||| || || Sbjct 45729 CGGGCAAGACCAACTTCTTTGAGAAGCGCGTCGGTGACTA 45768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476607768399360