Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq20 95.1 1e-14 seq230 91.5 1e-13 seq254 86.0 6e-12 >seq20 Length=105358 Score = 95.1 bits (104), Expect = 1e-14 Identities = 182/267 (68%), Gaps = 6/267 (2%) Strand=Plus/Plus Query 138142 ACGTTGAGGCCGATGCCGCCTCCGTGTTTAGATATCATGGCACAATCGTTGAGAGTTCTA 138201 |||||||| || || ||||| || || || |||| ||||||| ||||| || Sbjct 13133 ACGTTGAGACCAATACCGCCAGCGGTCTTGGAGATCAAGGCACAAGTCTTGAGTGTGTCG 13192 Query 138202 TAGATGCCGTTTATGCTGTCTTCCTGGATGTTGAGTAGATAACACGACGACATTTGAGGC 138261 |||||||| | |||||||| |||| |||| || || | || |||||||||||||| Sbjct 13193 TAGATGCCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGACGACATTTGAGGA 13252 Query 138262 ATTTTCATGCCAGCCGAGAATAGAGTGGGACTAGCGTGGGTAA---ACATTTTCGAGCGC 138318 || |||| || ||| || || || |||||| || | || ||| ||| | Sbjct 13253 TTTGGTGTGCCCGCATTGAAGAGGGTAGGCGAAGCGTGTGTGAAGTACTTTTGCGA---C 13309 Query 138319 ATCAATCTATATGACTCGATCGCACTCTCGATATCATCACCATGAATCTGAAGAGCGACA 138378 || | || | ||| ||||| ||||||| | || ||||| || | ||| || Sbjct 13310 ATGTAGTCGTAAGTCTCAATCGCCTTCTCGATGTTCTCTCCATGGATGCCGACAGCCACG 13369 Query 138379 CGCATCAGCATGTGTTGAGGTCTCTCG 138405 ||||||| ||||||||| || | |||| Sbjct 13370 CGCATCAACATGTGTTGTGGGCGCTCG 13396 >seq230 Length=87271 Score = 91.5 bits (100), Expect = 1e-13 Identities = 125/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 110712 GCTCGATGATATTATTGTTCACGATGACGTCGGCGGCAGCGAAAAAGGCGAGAACGTGTT 110771 |||||| | || | ||| |||||| |||||| ||||||||| || ||||| ||||| Sbjct 45055 GCTCGACAAGGTTCTCGTTGACGATGCCGTCGGAGGCAGCGAAGAAAGCGAGGACGTGGG 44996 Query 110772 TAAGAAAGAATCGTTCCTTGTCGTTCAGTTTATTGTTCCAGTCTTCAAAGTCCTTGGACA 110831 | ||||| || || | |||||| ||| |||||||| || | || || ||||| | Sbjct 44995 AGATGAAGAAGCGCTCGTCGTCGTTGAGTCGCTTGTTCCAATCGTGAAGATCTTTGGAGA 44936 Query 110832 TGTCGATCTCTTCGACCTTCCAGTGACAATCGACCGCCTTCTTGTACGATTGCCA 110886 ||||||||| || | ||||| | | | |||||||||||| |||||| Sbjct 44935 GGTCGATCTCCTCTGCGGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATTTGCCA 44881 >seq254 Length=118772 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || | || || || | ||||| | ||||||||| | | | Sbjct 32552 ATGCAAATCTTTGTCAAGACTCTTACTGGCAAGACTATCACATTGGAAGTCGAATCGAGC 32493 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| ||||| | || ||| || || || || |||||||| ||||| || ||| Sbjct 32492 GATACCATCGACAACGTGAAATCGAAGATCCAAGACAAGGAGGGTATCCCGCCTGACCAG 32433 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | ||||| | || || || || | ||||| | ||| ||||||| |||||| Sbjct 32432 CAGCGTCTCATCTTCGCTGGTAAGCAGTTGGAAGACGGCCGAACGCTCAGCGACTACAAT 32373 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTG 25384 ||||| || || || || | || || ||| Sbjct 32372 ATTCAGAAGGAGTCGACACTGCACTTGGTG 32343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445091195320320