Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq230 158 2e-32 seq20 116 5e-20 >seq230 Length=87271 Score = 158 bits (174), Expect = 2e-32 Identities = 211/288 (73%), Gaps = 13/288 (5%) Strand=Plus/Plus Query 1455779 TGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGG 1455838 ||| |||||||| || ||||||||||||||||| |||||||| |||||| |||||||| Sbjct 44881 TGGCAAATGTAC-AAGAAGGCCGAGGCCTCCTTCTGGACCGCAGAGGAGATCGACCTCTC 44939 Query 1455839 CGCCGA----CACGGTCC--ACTGGGTGTCG-CTGAGCGACGACGAGCGCCATTTCATCA 1455891 | || |||| | || | || || | ||||||||||||| |||||| Sbjct 44940 CAAAGATCTTCACGATTGGAACAAG----CGACTCAACGACGACGAGCGCTTCTTCATCT 44995 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||||||||||| ||| ||||| ||| ||| |||||||| ||||||||| | || Sbjct 44996 CCCACGTCCTCGC-TTTCTTCGCTGCCTCCGACGGCATCGTCAACGAGAACCTTGTCGAG 45054 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| || || ||| | || ||||| || | || ||||| ||||||||| Sbjct 45055 CGCTTCTCCGGCGAAGTACAAATACCTGAGGCGCGATGCTTCTACGGCTTCCAGATCATG 45114 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTAC 1456059 || || ||| ||||||| || || ||||| ||||| |||||||||||| Sbjct 45115 ATGGAGAACGTCCACTCGGAGACATACTCTCTCCTCATCGACACCTAC 45162 Score = 102 bits (112), Expect = 1e-15 Identities = 181/259 (70%), Gaps = 4/259 (2%) Strand=Plus/Plus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 |||||| |||||||||| ||||||||| ||||| ||| || | || || || Sbjct 45536 ATCATCACTGAGGCCGTCGCGATCGAGAAGGAGTTCCTCACAGATGCTCTCCCCTGCGCT 45595 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 || | ||||||||| | | |||||||||||||||||||| ||| || || || |||| Sbjct 45596 CTGCTTGGCATGAACTCTGCA-CTCATGTGCCAGTACATTGAGTTT-GTGGCTGATCGCC 45653 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 | || | | || || | | ||| ||||| | ||||||| ||| | ||| Sbjct 45654 TTCTGCTGTCCCTTGGTAACA-ACAAGTACTACAACGCCACCAACCCCTTCGACTTCATG 45712 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCC 1456761 ||| ||||| || | ||||||||||||||| || ||| ||||| || || ||| Sbjct 45713 GAGAACATCTCTCTGGCGGGCAAGACCAACTTCTTTGAGAAGCGCGTCGGTGACTACCAG 45772 Query 1456762 AAGGCCGGCGTCACCGCCA 1456780 ||||| || |||| |||| Sbjct 45773 AAGGCTGGTGTCATGGCCA 45791 Score = 87.8 bits (96), Expect = 3e-11 Identities = 118/158 (75%), Gaps = 11/158 (7%) Strand=Plus/Plus Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCA---ACAAGGAGGGCCTCGACACTTTGCCG 1456179 || ||||| |||||||| | || |||||| ||||| | |||||| ||| ||| Sbjct 45275 AAGAAGGCTGACTGGGCCCTCAAATGGATCTCAGACAAGAA----CTCGAC-CTTCGCCA 45329 Query 1456180 AGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-CC 1456237 | || || |||| || ||||| || ||||||||||| ||| ||| ||| ||| || Sbjct 45330 ACCGTCTGGTCGCATTCGCCGCCGTTGAGGGCATCTTCTTCAGCGGCTCGTTC-GCGTCC 45388 Query 1456238 ATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||| ||| | |||||||| ||||| ||||||||||| Sbjct 45389 ATCTTCTGGTTGAAGAAGCGTGGCCTGATGCCCGGTCT 45426 >seq20 Length=105358 Score = 116 bits (128), Expect = 5e-20 Identities = 205/299 (69%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 259883 ACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCC 259942 || ||||| ||||||||| ||| ||||| || |||| || ||||| ||||| Sbjct 13323 ACTTACGACTACATGTCGCAAAAGTACTTCACACACGCTTCGCCTACCCTCTTCAATGCG 13264 Query 259943 GGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATC 260002 ||||| || || || | ||||| ||||| || | |||||||||| || || Sbjct 13263 GGCACACCAAATCCTCAAATGTCGTCCTGCTTCCTCATCGACATGAAGGAGGACAGCATT 13204 Query 260003 GAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATC 260062 || |||||||| ||||| |||||| || || | ||||||||| | || ||||| || Sbjct 13203 GATGGCATCTACGACACACTCAAGACTTGTGCCTTGATCTCCAAGACCGCTGGCGGTATT 13144 Query 260063 GGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAG 260122 ||| | || ||| | || ||| | ||| | ||| | | |||||||| || Sbjct 13143 GGTCTCAACGTTCACCGTATCCGTGCCACTGGCTCTTACATCGGTGGCACCAATGGTACA 13084 Query 260123 TCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCA 260181 || ||||| || | ||||||||||| || | ||| ||||||| || || || || || Sbjct 13083 TCGAACGGTCTCATTCCCATGCTTCGTGTCTACAACAACACGGCTCGTTATGTTGATCA 13025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177755643741312