Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq254 127 2e-24 seq241 114 1e-20 seq20 100 3e-16 >seq254 Length=118772 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || |||| ||||| ||||| |||||||||||||| |||||||| ||| Sbjct 32782 CCTCCACGAAGGCGCAGGACGAGATGTAGAGTGGATTCCTTTTGGATGTTGTAATCGGAG 32841 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || |||||||| ||||| || |||||||| |||||||| || || || Sbjct 32842 AGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAAGCGCTGCTGGTCCGGAGGG 32901 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || ||||| ||| ||||| ||| | || ||||| || || || Sbjct 32902 ATGCCCTCCTTATCCTGAATCTTTGACTTGACGTTGTCGATCGTATCGGATGACTCAACC 32961 Query 134667 TCGAGAGTAATGGTTTTACCGGT 134689 || || || ||||| || ||||| Sbjct 32962 TCAAGGGTGATGGTCTTGCCGGT 32984 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || || | ||||| || || || || ||||| || |||||||||||| Sbjct 33065 CCTCCACGAAGGCGGAGGACGAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGGAG 33124 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| || || || ||||| ||||| || || |||| |||||||| || || || Sbjct 33125 AGGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGAGGG 33184 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || || || || ||||| ||| | ||||||||||| ||||| Sbjct 33185 ATACCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATGGTGTCGGACGACTCCACC 33244 Query 134667 TCGAGAGTAATGGTTTTACCGGT 134689 || || || ||||| || ||||| Sbjct 33245 TCAAGGGTGATGGTCTTGCCGGT 33267 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| | ||| || ||||| ||||| || ||||||||||| | || | Sbjct 32563 AGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTACGG 32622 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| |||||||| ||||| |||||||| | ||||||||||| || || || || || Sbjct 32623 CCGTCTTCGAGCTGCTTGCCAGCAAAAATGAGTCGCTGCTGATCCGGGGGAATACCCTCC 32682 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || || || ||| | ||||| || || || || || | || Sbjct 32683 TTGTCCTGAATCTTCGACTTCACGTTGTCAATCGTGTCTGAAGACTCAACCTCCAATGTG 32742 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || | || || ||||| || ||||| Sbjct 32743 ATAGTCTTGCCAGTGAGTGTCTTGACGAAGATCTGCAT 32780 >seq241 Length=242151 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || | ||| ||||| || ||||| || |||||||||||| Sbjct 46863 CCACCACGGAGACGGAGGACCAAGTGGAGCGTTGACTCCTTCTGGATGTTGTAGTCGGAC 46804 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| |||||||| ||||| || || ||||| |||||||| || || || Sbjct 46803 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGGA 46744 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| ||| | ||||||||||| ||||| Sbjct 46743 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 46684 Query 134667 TCGAGAGTAATGGTTTTACCGGT 134689 ||||| || || || || ||||| Sbjct 46683 TCGAGGGTGATCGTCTTGCCGGT 46661 >seq20 Length=105358 Score = 100 bits (110), Expect = 3e-16 Identities = 345/533 (65%), Gaps = 15/533 (3%) Strand=Plus/Minus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 ||||||||| || |||||||||| || ||||| || || || |||| || || | Sbjct 13386 CAACACATGTTGATGCGCGTGGCTGTCGGCATCCATGGAGAGAACATCGAGAAGGCGATT 13327 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 || || ||| | ||||| || | || || ||||||||||| ||| | || Sbjct 13326 GAGACTTACGACTACATGTCGCAAAAGTACTTCACACACGCTTCGCCTACCCTCTTCAAT 13267 Query 7684 GCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGC 7743 ||||||||| |||||| |||| || || || | | |||| || |||||| Sbjct 13266 GCGGGCACACCAAATCCTCAAATGTCGTCCTGCTTCCTCATCGACATGAAGGAGGACAGC 13207 Query 7744 ATCGACGGCATTTACAACACGCTGCGCGA-TTGCGCCAATATTTCCAAATACGGCGGCGG 7802 || || ||||| ||| |||| || | || ||| ||| || ||||| || ||||| Sbjct 13206 ATTGATGGCATCTACGACACACT-CAAGACTTGTGCCTTGATCTCCAAGACCGCTGGCGG 13148 Query 7803 AATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGG 7862 || ||||| ||||| || | || |||| || ||||| |||||| || Sbjct 13147 TATTGGTCTCAACGTTCACCGTATCCGTGCCACTGGCTCTTACATCGGTGGCACCAATGG 13088 Query 7863 AAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGA 7922 | | | | |||| | |||||| | || || | ||| ||| ||| || |||| || Sbjct 13087 TACATCGAACGGTCTCATTCCCATGCTTCGTGTCTACAACAACACGGCTCGTTATGTTGA 13028 Query 7923 CCAGGGGGG---AAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGA 7979 || || || |||||| |||||| |||||||| ||||||| ||||| || || Sbjct 13027 TCAAGGTGGCAACAAGCGCCCTGGCGCCTTCGCCATCTACCTGGAGCCATGGCATGCTGA 12968 Query 7980 CATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCAA-----AGCG 8034 | | || | || |||| |||||| | | || ||| || || || Sbjct 12967 TGTCTTCGGTTTCCTTGATCT---TCGCAAGAACCATGGCAAAG--AGGAAGTTCGTGCC 12913 Query 8035 CGCGATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCA 8087 || || || |||| || | | ||| | || || || || |||| ||||||||| Sbjct 12912 CGTGACCTCTTCTACGCACTATGGATTCCAGACCTTTTCATGAAGCGCGTTCA 12860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505394761131520