Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq20 150 2e-31 >seq20 Length=105358 Score = 150 bits (166), Expect = 2e-31 Identities = 402/612 (66%), Gaps = 2/612 (0%) Strand=Plus/Plus Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 ||||| ||||| || | || || | | ||||| ||| || || || | | | | Sbjct 12785 TCGAACTCATCACCATACACGTCGGCAAGACCAGGGGCTTCGTTGGGGCAGAATAGCGTC 12844 Query 69577 CACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAG 69636 ||| || ||| |||| ||| || ||||| || || || |||||||| || || ||| Sbjct 12845 CACTCACCATTCTCCTGAACGCGCTTCATGAAAAGGTCTGGAATCCATAGTGCGTAGAAG 12904 Query 69637 AGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATA 69696 || || | || | | ||| || || || || || |||||| || || | | Sbjct 12905 AGGTCACGGGCACGAACTTCCTCTTTGCCATGGTTCTTGCGAAGATCAAGGAAACCGAAG 12964 Query 69697 ATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCC 69756 | ||||| ||||||||| || || || || || | | | || || || || || || || Sbjct 12965 ACATCAGCATGCCATGGCTCCAGGTAGATGGCGAAGGCGCCAGGGCGCTTGTTGCCACCT 13024 Query 69757 TGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGAT 69816 ||||| | || | || ||||| || ||||| | ||||| ||||| | ||| || ||| Sbjct 13025 TGATCAACATAACGAGCCGTGTTGTTGTAGACACGAAGCATGGGAATGAGACCGTTCGAT 13084 Query 69817 TTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCT 69876 ||||||| || ||| || ||| || | || || ||| || ||||| Sbjct 13085 GTACCATTGGTGCCACCGATGTAAGAGCCAGTGGCACGGATACGGTGAACGTTGAGACCA 13144 Query 69877 ATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCT 69936 || || || || | || ||||| | |||||| || | |||||| || || || || Sbjct 13145 ATACCGCCAGCGGTCTTGGAGATCAAGGCACAAGTCTTGAGTGTGTCGTAGATGCCATCA 13204 Query 69937 ATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCC 69996 ||||| || || |||||| | || || ||| ||||||||| ||| | || ||| Sbjct 13205 ATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGACGACATTTGAGGATTTGGTGTGCCC 13264 Query 69997 GCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAA-GCAGATTGTATGT 70055 ||||| || | ||||| || ||||| ||||| | |||| || | | || | ||| || Sbjct 13265 GCATTGAAGAGGGTAGGCGAAGCGTGTGTGAAGTACTTTTGCGACATGTAG-TCGTAAGT 13323 Query 70056 TTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATG 70115 ||||| || || || | | ||| || || | || || ||||||||||| || Sbjct 13324 CTCAATCGCCTTCTCGATGTTCTCTCCATGGATGCCGACAGCCACGCGCATCAACATGTG 13383 Query 70116 CTGAGGTCGTTC 70127 || || || || Sbjct 13384 TTGTGGGCGCTC 13395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686903854256640