Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq254 127 2e-24 seq20 120 3e-22 >seq254 Length=118772 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | ||||| || | || || || || ||||||||||||||||| Sbjct 32326 CCACCACGCAGGCGGAGCACCAAGTGCAGTGTCGACTCCTTCTGAATATTGTAGTCGCTG 32385 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || ||||||| | ||| ||||| ||| | ||||||||||| || || ||||| Sbjct 32386 AGCGTTCGGCCGTCTTCCAACTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGCGGG 32445 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||| || || |||||| ||||| | | || | || || | | ||| ||| Sbjct 32446 ATACCCTCCTTGTCTTGGATCTTCGATTTCACGTTGTCGATGGTATCGCTCGATTCGACT 32505 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | || |||| ||||| || ||||| || ||||||||||||||| Sbjct 32506 TCCAATGTGATAGTCTTGCCAGTAAGAGTCTTGACAAAGATTTGCATA 32553 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | ||||| || | || || || || || || |||||||| Sbjct 32554 CCACCACGCAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCTGAG 32613 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || ||||||||||||| || || || ||||||| ||||| |||||||| || Sbjct 32614 AGAGTACGGCCGTCTTCGAGCTGCTTGCCAGCAAAAATGAGTCGCTGCTGATCCGGGGGA 32673 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||| || || ||||| |||| | | || | ||||||| | ||||| Sbjct 32674 ATACCCTCCTTGTCCTGAATCTTCGACTTCACGTTGTCAATCGTGTCTGAAGACTCAACC 32733 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 || | || |||| ||||| || || || || || ||||| |||||| || Sbjct 32734 TCCAATGTGATAGTCTTGCCAGTGAGTGTCTTGACGAAGATCTGCATACCT 32784 >seq20 Length=105358 Score = 120 bits (132), Expect = 3e-22 Identities = 285/426 (67%), Gaps = 11/426 (3%) Strand=Plus/Plus Query 131608 TTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATC 131667 |||| |||| || | ||||| |||| | || |||| | ||| |||||||| || | || Sbjct 12823 TTCGTTGGGGCAGAATAGCGTCCACTCACCATTCTCCTGAACGCGCTTCATGAAAAGGTC 12882 Query 131668 CGGCACCCATAACGCGTACAACAGATCTCTAGCTTT---TTTCTCTTCTGTACCCATAAt 131724 || | ||||| ||||| || || || | || || ||||| || |||| | Sbjct 12883 TGGAATCCATAGTGCGTAGAAGAGGTCACGGGCACGAACTTCCTCTT-TG---CCATGGT 12938 Query 131725 ttttttCAAATTTAAAAAGTCCAAA-ATGTCCGCATGCCAGGGTTCCAAATACACTGCCA 131783 | || || | || | || || | || |||||||| || |||| || | || | Sbjct 12939 TCTTGCGAAGATCAAGGAAACCGAAGACATCAGCATGCCATGGCTCCAGGTAGATGGCGA 12998 Query 131784 TTGCGCCTTTGCGCTTA---CCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGC 131840 ||||| |||||| || ||||||| ||||| |||| || |||||||||| || | Sbjct 12999 AGGCGCCAGGGCGCTTGTTGCCACCTTGATCAACATAACGAGCCGTGTTGTTGTAGACAC 13058 Query 131841 GCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGG 131900 | | |||||| | |||||| | | |||||||||| ||||| |||| ||| Sbjct 13059 GAAGCATGGGAATGAGACCGTTCGATGTACCATTGGTGCCACCGATGTAAGAGCCAGTGG 13118 Query 131901 CTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCATT 131960 | | ||| |||||||||||| |||||||| || || || ||||| | || || Sbjct 13119 CACGGATACGGTGAACGTTGAGACCAATACCGCCAGCGGTCTTGGAGATCAAGGCACAAG 13178 Query 131961 TGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAAAGCAAG 132020 | | || |||| ||||| || || | ||||||| | ||||||| | ||||| | Sbjct 13179 TCTTGAGTGTGTCGTAGATGCCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGG 13238 Query 132021 AGGACA 132026 | |||| Sbjct 13239 ACGACA 13244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424931416960512