Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq20 279 6e-70 seq230 150 2e-31 seq367 87.8 2e-12 >seq20 Length=105358 Score = 279 bits (308), Expect = 6e-70 Identities = 1124/1745 (64%), Gaps = 43/1745 (2%) Strand=Plus/Plus Query 110363 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAG 110422 |||||||||||||| || ||||| || || | ||||| || | |||||| |||| | Sbjct 11666 CGGAGATAGTACATTCCAGTCTTCAGCCCAAGCTTCCAGCCGGCAAAATGCATCGAAGTG 11725 Query 110423 AGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCAT--ACTTTGACTTTGGTCAATGA 110480 | |||| ||| || || | |||| | ||||| ||| |||| |||| |||| Sbjct 11726 ATCTTGCCCATGGTCGGCTCCTTCATGTGAATGTTCAAGGACTGAGACT--GGTCGATGA 11783 Query 110481 AGCGCCCC-CGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTTCCCAAACTGTG 110539 | ||| || || | || ||||| | |||| | | || ||||| ||||| Sbjct 11784 A-CGCACCACGGTCGGCAGCCATCTGGATGATGGTGCGCTGCGAGATCTCCCACACTGTC 11842 Query 110540 CGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCC 110599 || ||| |||| | || || ||||| | | || |||| |||||||| ||| Sbjct 11843 TTGTACAGAGTCTTCGTCTCTTCAGGGATGTTGGGAATCCTCTGAATGGAACC----GCC 11898 Query 110600 TTCACC-ATGAGA---TCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATT 110655 || | |||| | | |||||| | || ||||| || || || | ||| || || Sbjct 11899 ATCGGCGATGATACGGTTCTTCATGTTCTCAGACCACAGTCCCATGTCAACGAGATCTTT 11958 Query 110656 GACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTT 110715 | ||| |||||| | |||||| || || || | | ||||||||| Sbjct 11959 CAAGAGCCAGGGGTTGACGACTTGAAACTCGCCGGCCAGCACACGGCGAGAGTAGATGTT 12018 Query 110716 TGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATT-TGTGCGGTGGAGGCTGTTG 110774 || ||||| || || ||||| || ||||| ||||||| | || | || || || || | Sbjct 12019 TGACGTGTAGGGCTCGAAGCACTCGTTATT-CCCAAGAATCTGAGACGTAGATGCGGTCG 12077 Query 110775 GCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTT----G 110830 |||| ||||| | ||||||| || |||| || | || ||| ||||| | Sbjct 12078 GCATGGGTGCAACCAAAAGAGAATTGCGAACGCCGTGCTGTGCGATCTTGTCCTTCAGCG 12137 Query 110831 AGAAC--ATCCCAGTCGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCA 110888 || | ||||||| || | || | ||| | || |||| ||| ||| |||||||| Sbjct 12138 AGGCCCAATCCCAG----AGATCAG-TGGGTGTGACGTTCC-ACAGGTCGTACTGAAGCT 12191 Query 110889 CCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATT 110948 |||||||| |||||||| || | || | || | || | | | ||| | | Sbjct 12192 GGCCTTGGGAGATAGGAGAACCTTCGTATGTCGCGTAAGGGCCCAGCTCCTTAGCAATGT 12251 Query 110949 CACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCT 111008 | || | |||| ||||| || ||||| || ||||| | || | || || Sbjct 12252 CGCAAGATGAGGTGAGGGCCGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTTCT 12311 Query 111009 TGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAA 111068 |||| || || || || | |||| | || |||| |||||||| |||| Sbjct 12312 TGGCCTCGGGCGACTCGAAGGGCAAGCGTAGTGCCAGGAAGGCATCAGCGAGACCCTGAA 12371 Query 111069 CACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAA 111128 |||| | || ||||||||||| || | ||| || || ||| || || || Sbjct 12372 CACCGAGCCCGATAGGTCTGTGACGGAAATTGCTGCGACGTGCTTCCTCTACTGGGTAGT 12431 Query 111129 AATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTT 111188 || || |||| ||| | || |||||||| | |||| ||| || |||| Sbjct 12432 GGTTGACTTCGATGATCTTGTTCAAGTTGCGGGTAACAACTTGGGTGACTTCGTGGAGTT 12491 Query 111189 TTTCATAATCAAAAGTGCGAGTCTCTTCATTG---ACATACTTTGGAAGGGCGATTGATG 111245 | | | ||||| | | | | ||| || | || || || || |||| || | Sbjct 12492 TGTTGAAGTCAAAC-TCCCCG-CGCTT-ATAGTCCACGAACGAGGGGAGCGCGAGCGAGG 12548 Query 111246 CCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGT 111305 | | || || || || |||||| | | |||||||| | || || || || | || Sbjct 12549 CGAGGTTACATACCGCTACCTCATCAGGAGCAGTGTACTCGACGATCTCGGTGCAGAGGT 12608 Query 111306 TGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGT 111365 | || || ||| || || | |||||||||||| |||||| |||||| ||||| |||| Sbjct 12609 TAGAGCTGCGAATGGTACCAAGATTCTTTTGGTTGCTCTTCCGGTTGCAAGCATCTTTGT 12668 Query 111366 AGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGG 111425 |||||||| | || | || ||||||||||| | | || || || | ||| | | Sbjct 12669 AGAGCATGAAAGGGTTACCAGTCTCCGTCTGAGCCTCAAGGATGGCATACCAGAGCTTTT 12728 Query 111426 CGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTA-CTTTGTGTAGAGGGCTTCA 111484 ||| | ||| | | | || || ||||| | || |||||| | || Sbjct 12729 GGGCGCGAACAGTCTCCCGACCACGGTTGTCACGTTCGTAACGATG-GTAGAGCTCCTCG 12787 Query 111485 AACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCAT 111544 ||||| ||||| | |||||| ||||| || || | || || ||||| || | ||| Sbjct 12788 AACTCATCACCATACACGTCGGCAAGACCAGGGGCTTCGTTGGGGCAGAATAGCGTCCAC 12847 Query 111545 TGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGA 111604 | |||| |||| ||| |||||||||||||||||||||||||| || | | ||||| Sbjct 12848 TCACCATTCTCCTGAACGCGCTTCATGAAAAGGTCTGGAATCCATAGTGCGTAGAAGAGG 12907 Query 111605 TCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATA 111664 || | ||| | || || | || ||||| || | |||||||| | | || | Sbjct 12908 TCACGGGCACGAACTTCCTCTTTGCCATGGTTCTTGCGAAGATCAAGGAAACCGAAGACA 12967 Query 111665 TCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTG 111720 || || ||||||||||| || |||| |||| | || | | | ||| | |||| Sbjct 12968 TCAGCATGCCATGGCTCCAGGTAGATGGCGAAGGCGCCAGGGCGCTTGTTGCC-ACCTTG 13026 Query 111721 ATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTG 111780 || ||||| || || ||| ||| | || |||||||| ||||| | ||| | ||| Sbjct 13027 ATCAACATAACGAGCCGTGTTGTTGTAGACACGAAGCATGGGAATGAGACCGTTCGATGT 13086 Query 111781 ACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAAT 111840 |||||| || || | || ||| | |||| | | | || | || | ||||| Sbjct 13087 ACCATTGGTGCCACCGATGTAAGAGCCAGTGGCACGGATACGGTGAACGTTGAGACCAAT 13146 Query 111841 ACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGAT 111900 ||| ||||| ||| ||||| ||||| | | || || | ||||| || | || Sbjct 13147 ACCGCCAGCGGTCTTGGAGATCAAGGCACAAGTCTTGAGTGTGTCGTAGATGCCATCAAT 13206 Query 111901 TGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGC 111960 ||||||||| || |||| |||||||| ||||| || || ||||||| || || Sbjct 13207 GCTGTCCTCCTTCATGTCGATGAGGAAGCAGGACGACATTTGAGGATTTGGTGTGCCCGC 13266 Query 111961 ATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC-CTTGGGACATCTTGTCGTATGTCT 112019 |||||||||||| || | ||||| |||| ||| ||| ||||| | |||||| |||| Sbjct 13267 ATTGAAGAGGGTAGGCGAAGCGTGTGTGAA-GTACTTTTGCGACATGTAGTCGTAAGTCT 13325 Query 112020 CCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACT 112079 | | | || |||| || || |||||||||| || || ||||| ||||||| | Sbjct 13326 CAATCGCCTTCTCGATGTTCTCTCCATGGATGCCGACAGCCACGCGCATCAACATGTGTT 13385 Query 112080 GTGGG 112084 ||||| Sbjct 13386 GTGGG 13390 >seq230 Length=87271 Score = 150 bits (166), Expect = 2e-31 Identities = 351/519 (68%), Gaps = 14/519 (3%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| ||||| ||||||||||||||||||||||| || | || ||||| ||||| Sbjct 45768 TAGTCACCGACGCGCTTCTCAAAGAAGTTGGTCTTGCCCGCCAGAGAGATGTTCTCCATG 45709 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCA--AATGGGTGGCACCCCAACTTGTTTGAGGAGAC 122488 ||||| || || || | ||||| | | | | || ||| || || || | Sbjct 45708 AAGTCGAAGGGGTTGGTGGCGTTGTAGTACTTGTTGTTACC--AAGGGACAGCAGAAGGC 45651 Query 122489 GATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 122548 |||| | |||| |||||||||||| | |||| |||||||||| || | || | Sbjct 45650 GATCAGCCACAAACTCAATGTACTGGCACATGAGTGCAGAGTTCATGCCAAGCAGAGCGC 45591 Query 122549 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 122608 | ||||| || || || |||| | ||||| ||| | || ||||| | | |||||| | Sbjct 45590 AGGGGAGAGCATCTGTGAGGAACTCCTTCTCGATCGCGACGGCCTCAGTGATGATGGCCT 45531 Query 122609 GGATAGTTTCGGTAGTGGGTC---TATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACT 122665 ||| | || || |||| | | || | | || || ||| || |||||| | Sbjct 45530 GGACGGCATCCTTACTGGGGCGTGTGTTGAGGAGAGAGAAGAGGAGG--CA-GGCAAAGT 45474 Query 122666 CCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGA 122725 | ||| | ||||| || || || || || || |||||||| ||||| ||||| | Sbjct 45473 CAGTGTGCATGCCCTCGTCGCGAGAGATCAGCTCGTTTGAGAATGTGAGACCGGGCATCA 45414 Query 122726 GACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACCCTCC 122784 | || |||||||||||||| | || | ||| ||| || ||| ||||||||| ||||| Sbjct 45413 GGCCACGCTTCTTCAACCAGAAGATGGACGC-GAACGAGCCGCTGAAGAAGATGCCCTCA 45355 Query 122785 ACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCA-AACCATTT 122843 || || || || | || || | |||||||| |||| ||| | | | |||||| Sbjct 45354 ACGGCGGCGAATGCGACCAGACGGTTGGCGAAGG-TCGAGTTCTTGTCTGAGATCCATTT 45296 Query 122844 CATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGT 122882 | ||||| | |||||||| ||| ||||| || || Sbjct 45295 GAGGGCCCAGTCAGCCTTCTTGCGAATGCATGGAACTGT 45257 >seq367 Length=109793 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/228 (70%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGT-TGAT-TTTCGCGGGCGATTTCAAAGA 11687 || ||||| || |||||||||| || || ||| || | ||||||| | | | || | Sbjct 24028 GCGTCAATTTCGTCAATGAAGATGATGCAGGGTGTGCTCTTTCGCG--CATTGGCGAACA 23971 Query 11688 GATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAG- 11746 | || || || | |||||| ||||| ||||||||||| || || | | || | Sbjct 23970 GGTCACGCACACGCGAGGCACCGACACCGACAAACATCTCTACGAATTCAGAACCACTGA 23911 Query 11747 CACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCC 11806 |||| || |||||| || || || || || ||||| ||||||||| ||||| || Sbjct 23910 CACT-GAAGAATGGCACGCCAGACTCGCCGGCAGTGGCTTTGGCGAGGAGCGTCTTACCA 23852 Query 11807 GTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCA 11854 ||||| ||| || | ||||| || || || |||||||| |||||| Sbjct 23851 GTACCGGGCGGGCCGGAGAGAATCGCTCCACGAGGGATCTTCGCACCA 23804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628027478169600