Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq20 205 1e-47 seq230 109 7e-19 seq367 95.1 1e-14 >seq20 Length=105358 Score = 205 bits (226), Expect = 1e-47 Identities = 574/868 (66%), Gaps = 25/868 (3%) Strand=Plus/Plus Query 118704 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 118763 || || |||| || || || ||||| || | |||||| | |||||||||| | Sbjct 12533 GGGAGCGCGAGCGAGGCGAGGTTACATACCGCTACCTCATCAGGAGCAGTGTACTCGACG 12592 Query 118764 ATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 118823 || || ||||| | ||| || || |||||| || | |||||||| || ||| | Sbjct 12593 ATCTCGGTGCAGAGGTTAGAGCTGCGAATGGTACCAAGATTCTTTTGGTTGCTCTTCCGG 12652 Query 118824 TTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 118883 || || ||||| ||||| |||||| | || | || |||||||| || | || || || Sbjct 12653 TTGCAAGCATCTTTGTAGAGCATGAAAGGGTTACCAGTCTCCGTCTGAGCCTCAAGGATG 12712 Query 118884 GCCTTCCAGACATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTA-CTT 118942 || | ||||| | || | ||||| | | || || ||||| | Sbjct 12713 GCATACCAGAGCTTTTGGGCGCGAACAGTCTCCCGACCACGGTTGTCACGTTCGTAACGA 12772 Query 118943 TGTGTAGAGGGCTTCAAACTCTTCACC---CACGGCCTCTGAGAGCCCTGGTGCCTTATC 118999 || |||||| | || ||||| ||||| |||| || | || || || || | | Sbjct 12773 TG-GTAGAGCTCCTCGAACTCATCACCATACACG---TCGGCAAGACCAGGGGCTTCGTT 12828 Query 119000 TGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGAT 119059 |||||||| || | ||| | |||| ||||| ||| ||||||||||| |||||||| || Sbjct 12829 GGGGCAGAATAGCGTCCACTCACCATTCTCCTGAACGCGCTTCATGAAAAGGTCTGGAAT 12888 Query 119060 CCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAA 119119 ||| || || ||||||| || || ||| |||| || | || || || || | Sbjct 12889 CCATAGTGCGTAGAAGAGGTCACGGGCACGAACTTCCTCTTTGCCATGGTTCTTGCGAAG 12948 Query 119120 CTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTT 119179 || | || | | || ||| || ||||| || |||||||| | |||| | || Sbjct 12949 ATCAAGGAAACCGAAGACATCAGCATGCCATGGCTCCAGGTAGATGGCGAAGGCGCC--- 13005 Query 119180 ACGACGA------CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCAT 119233 | | || ||| | || | ||||| | || ||| ||| | ||||||||||| Sbjct 13006 AGGGCGCTTGTTGCCACCTTGATCAACATAACGAGCCGTGTTGTTGTAGACACGAAGCAT 13065 Query 119234 TGGAATGATACCATCGGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTG 119291 ||||||| ||| | ||| ||||| || || |||| || ||| | | |||| | | Sbjct 13066 GGGAATGAGACCGTTCGATGTACCATTGGTGCCACCGATGTAAGAGCC--AGTGGCACGG 13123 Query 119292 ACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTG 119351 | | ||| | || | ||||||||| || || ||| ||||| || || | || Sbjct 13124 ATACGGTGAACGTTGAGACCAATACCGCCAGCGGTCTTGGAGATCAAGGCACAAGTCTTG 13183 Query 119352 AGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGAC 119411 || || ||||||| ||||| || ||| |||| | |||||||||||||| |||| Sbjct 13184 AGTGTGTCGTAGATGCCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGACGAC 13243 Query 119412 ATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATAC-C 119470 |||||||| | ||||| || || |||||||| || || | ||||| |||| ||| Sbjct 13244 ATTTGAGGATTTGGTGTGCCCGCATTGAAGAGGGTAGGCGAAGCGTGTGTGAA-GTACTT 13302 Query 119471 TTGGGACATCTTGTCGTAGGTCTCCA-AGACGGCGGGAATGTCTTCCCCGTGAATACCGA 119529 ||| ||||| | |||||| ||||| | | | | | |||| || || || || |||| Sbjct 13303 TTGCGACATGTAGTCGTAAGTCTCAATCGCCTTCTCG-ATGTTCTCTCCATGGATGCCGA 13361 Query 119530 TCGAGACCCGCATAAACATGTATTGGGG 119557 | || ||||| ||||||| ||| || Sbjct 13362 CAGCCACGCGCATCAACATGTGTTGTGG 13389 >seq230 Length=87271 Score = 109 bits (120), Expect = 7e-19 Identities = 299/453 (66%), Gaps = 10/453 (2%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| || || |||||||| |||||||| ||||| || ||| ||| |||||||| Sbjct 45768 TAGTCACCGACGCGCTTCTCAAAGAAGTTGGTCTTGCCCGCCAGAGAGATGTTCTCCATG 45709 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCA--AATTGCTGGCACTCCAATCTGTTTGAGGAGAC 129845 || || || ||||| | | ||| | | ||| || || ||| || || | Sbjct 45708 AAGTCGAAGGGGTTGGTGGCGTTGTAGTACTTGTTGTTAC--CAAGGGACAGCAGAAGGC 45651 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 |||| | || |||||||||||| |||| | |||||||| || | || | Sbjct 45650 GATCAGCCACAAACTCAATGTACTGGCACATGAGTGCAGAGTTCATGCCAAGCAGAGCGC 45591 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 | ||||| || || || |||| ||||||| || | || || || | |||||| | Sbjct 45590 AGGGGAGAGCATCTGTGAGGAACTCCTTCTCGATCGCGACGGCCTCAGTGATGATGGCCT 45531 Query 129966 GAATGGTCTCCGTGCCAGGTC---TATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACT 130022 | | || ||| | | || | | ||| | | || || ||| || |||||| | Sbjct 45530 GGACGGCATCCTTACTGGGGCGTGTGTTGAGGAGAGAGAAGAGGAGG--CA-GGCAAAGT 45474 Query 130023 CCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 130082 | ||| | |||||||| || ||||| || || || ||||| ||||| ||||| | Sbjct 45473 CAGTGTGCATGCCCTCGTCGCGAGAGATCAGCTCGTTTGAGAATGTGAGACCGGGCATCA 45414 Query 130083 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 130142 | || ||||||||||||||||| || | || ||||| ||||||||| ||||| | Sbjct 45413 GGCCACGCTTCTTCAACCAGAAGATGGACGCGAACGAGCCGCTGAAGAAGATGCCCTCAA 45354 Query 130143 CACACGCGAACGCAAAGAGACGCTCAGCAAAGG 130175 | ||||| || | ||||| | || |||| Sbjct 45353 CGGCGGCGAATGCGACCAGACGGTTGGCGAAGG 45321 >seq367 Length=109793 Score = 95.1 bits (104), Expect = 1e-14 Identities = 165/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 14237 CCGACGGCGTCAATTTCATCGATGAAAACGATACATGGT-TGATTTTCACGGGCAACTTC 14295 |||| |||||||||||| || ||||| | ||| || ||| || | || || ||| | Sbjct 24034 CCGATGGCGTCAATTTCGTCAATGAAGATGATGCAGGGTGTGCTCTTT-CGCGCATTGGC 23976 Query 14296 AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG--CG 14353 || | || ||||| | | |||||||||||| ||||||||||| || || | | | Sbjct 23975 GAACAGGTCACGCACACGCGAGGCACCGACACCGACAAACATCTCTACGAATTCAGAACC 23916 Query 14354 GCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 14413 | | ||| | || ||| || ||| ||| || || || ||||| ||||||||| ||| Sbjct 23915 ACTG-ACACT-GAAGAATGGCACGCCAGACTCGCCGGCAGTGGCTTTGGCGAGGAGCGTC 23858 Query 14414 TTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCA 14467 || || || || || || | ||||| || ||||| |||||| | |||||| Sbjct 23857 TTACCAGTACCGGGCGGGCCGGAGAGAATCGCTCCACGAGGGATCTTCGCACCA 23804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618430747266560