Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29]
576 sequences; 38,548,368 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq20 205 1e-47
seq230 109 7e-19
seq367 95.1 1e-14
>seq20
Length=105358
Score = 205 bits (226), Expect = 1e-47
Identities = 574/868 (66%), Gaps = 25/868 (3%)
Strand=Plus/Plus
Query 118704 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 118763
|| || |||| || || || ||||| || | |||||| | |||||||||| |
Sbjct 12533 GGGAGCGCGAGCGAGGCGAGGTTACATACCGCTACCTCATCAGGAGCAGTGTACTCGACG 12592
Query 118764 ATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 118823
|| || ||||| | ||| || || |||||| || | |||||||| || ||| |
Sbjct 12593 ATCTCGGTGCAGAGGTTAGAGCTGCGAATGGTACCAAGATTCTTTTGGTTGCTCTTCCGG 12652
Query 118824 TTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 118883
|| || ||||| ||||| |||||| | || | || |||||||| || | || || ||
Sbjct 12653 TTGCAAGCATCTTTGTAGAGCATGAAAGGGTTACCAGTCTCCGTCTGAGCCTCAAGGATG 12712
Query 118884 GCCTTCCAGACATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTA-CTT 118942
|| | ||||| | || | ||||| | | || || ||||| |
Sbjct 12713 GCATACCAGAGCTTTTGGGCGCGAACAGTCTCCCGACCACGGTTGTCACGTTCGTAACGA 12772
Query 118943 TGTGTAGAGGGCTTCAAACTCTTCACC---CACGGCCTCTGAGAGCCCTGGTGCCTTATC 118999
|| |||||| | || ||||| ||||| |||| || | || || || || | |
Sbjct 12773 TG-GTAGAGCTCCTCGAACTCATCACCATACACG---TCGGCAAGACCAGGGGCTTCGTT 12828
Query 119000 TGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGAT 119059
|||||||| || | ||| | |||| ||||| ||| ||||||||||| |||||||| ||
Sbjct 12829 GGGGCAGAATAGCGTCCACTCACCATTCTCCTGAACGCGCTTCATGAAAAGGTCTGGAAT 12888
Query 119060 CCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAA 119119
||| || || ||||||| || || ||| |||| || | || || || || |
Sbjct 12889 CCATAGTGCGTAGAAGAGGTCACGGGCACGAACTTCCTCTTTGCCATGGTTCTTGCGAAG 12948
Query 119120 CTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTT 119179
|| | || | | || ||| || ||||| || |||||||| | |||| | ||
Sbjct 12949 ATCAAGGAAACCGAAGACATCAGCATGCCATGGCTCCAGGTAGATGGCGAAGGCGCC--- 13005
Query 119180 ACGACGA------CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCAT 119233
| | || ||| | || | ||||| | || ||| ||| | |||||||||||
Sbjct 13006 AGGGCGCTTGTTGCCACCTTGATCAACATAACGAGCCGTGTTGTTGTAGACACGAAGCAT 13065
Query 119234 TGGAATGATACCATCGGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTG 119291
||||||| ||| | ||| ||||| || || |||| || ||| | | |||| | |
Sbjct 13066 GGGAATGAGACCGTTCGATGTACCATTGGTGCCACCGATGTAAGAGCC--AGTGGCACGG 13123
Query 119292 ACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTG 119351
| | ||| | || | ||||||||| || || ||| ||||| || || | ||
Sbjct 13124 ATACGGTGAACGTTGAGACCAATACCGCCAGCGGTCTTGGAGATCAAGGCACAAGTCTTG 13183
Query 119352 AGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGAC 119411
|| || ||||||| ||||| || ||| |||| | |||||||||||||| ||||
Sbjct 13184 AGTGTGTCGTAGATGCCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGACGAC 13243
Query 119412 ATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATAC-C 119470
|||||||| | ||||| || || |||||||| || || | ||||| |||| |||
Sbjct 13244 ATTTGAGGATTTGGTGTGCCCGCATTGAAGAGGGTAGGCGAAGCGTGTGTGAA-GTACTT 13302
Query 119471 TTGGGACATCTTGTCGTAGGTCTCCA-AGACGGCGGGAATGTCTTCCCCGTGAATACCGA 119529
||| ||||| | |||||| ||||| | | | | | |||| || || || || ||||
Sbjct 13303 TTGCGACATGTAGTCGTAAGTCTCAATCGCCTTCTCG-ATGTTCTCTCCATGGATGCCGA 13361
Query 119530 TCGAGACCCGCATAAACATGTATTGGGG 119557
| || ||||| ||||||| ||| ||
Sbjct 13362 CAGCCACGCGCATCAACATGTGTTGTGG 13389
>seq230
Length=87271
Score = 109 bits (120), Expect = 7e-19
Identities = 299/453 (66%), Gaps = 10/453 (2%)
Strand=Plus/Minus
Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787
||||| || || |||||||| |||||||| ||||| || ||| ||| ||||||||
Sbjct 45768 TAGTCACCGACGCGCTTCTCAAAGAAGTTGGTCTTGCCCGCCAGAGAGATGTTCTCCATG 45709
Query 129788 AAATCAAATGGGTTCTTTGAGTTCCA--AATTGCTGGCACTCCAATCTGTTTGAGGAGAC 129845
|| || || ||||| | | ||| | | ||| || || ||| || || |
Sbjct 45708 AAGTCGAAGGGGTTGGTGGCGTTGTAGTACTTGTTGTTAC--CAAGGGACAGCAGAAGGC 45651
Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905
|||| | || |||||||||||| |||| | |||||||| || | || |
Sbjct 45650 GATCAGCCACAAACTCAATGTACTGGCACATGAGTGCAGAGTTCATGCCAAGCAGAGCGC 45591
Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965
| ||||| || || || |||| ||||||| || | || || || | |||||| |
Sbjct 45590 AGGGGAGAGCATCTGTGAGGAACTCCTTCTCGATCGCGACGGCCTCAGTGATGATGGCCT 45531
Query 129966 GAATGGTCTCCGTGCCAGGTC---TATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACT 130022
| | || ||| | | || | | ||| | | || || ||| || |||||| |
Sbjct 45530 GGACGGCATCCTTACTGGGGCGTGTGTTGAGGAGAGAGAAGAGGAGG--CA-GGCAAAGT 45474
Query 130023 CCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 130082
| ||| | |||||||| || ||||| || || || ||||| ||||| ||||| |
Sbjct 45473 CAGTGTGCATGCCCTCGTCGCGAGAGATCAGCTCGTTTGAGAATGTGAGACCGGGCATCA 45414
Query 130083 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 130142
| || ||||||||||||||||| || | || ||||| ||||||||| ||||| |
Sbjct 45413 GGCCACGCTTCTTCAACCAGAAGATGGACGCGAACGAGCCGCTGAAGAAGATGCCCTCAA 45354
Query 130143 CACACGCGAACGCAAAGAGACGCTCAGCAAAGG 130175
| ||||| || | ||||| | || ||||
Sbjct 45353 CGGCGGCGAATGCGACCAGACGGTTGGCGAAGG 45321
>seq367
Length=109793
Score = 95.1 bits (104), Expect = 1e-14
Identities = 165/234 (71%), Gaps = 6/234 (3%)
Strand=Plus/Minus
Query 14237 CCGACGGCGTCAATTTCATCGATGAAAACGATACATGGT-TGATTTTCACGGGCAACTTC 14295
|||| |||||||||||| || ||||| | ||| || ||| || | || || ||| |
Sbjct 24034 CCGATGGCGTCAATTTCGTCAATGAAGATGATGCAGGGTGTGCTCTTT-CGCGCATTGGC 23976
Query 14296 AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG--CG 14353
|| | || ||||| | | |||||||||||| ||||||||||| || || | | |
Sbjct 23975 GAACAGGTCACGCACACGCGAGGCACCGACACCGACAAACATCTCTACGAATTCAGAACC 23916
Query 14354 GCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 14413
| | ||| | || ||| || ||| ||| || || || ||||| ||||||||| |||
Sbjct 23915 ACTG-ACACT-GAAGAATGGCACGCCAGACTCGCCGGCAGTGGCTTTGGCGAGGAGCGTC 23858
Query 14414 TTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCA 14467
|| || || || || || | ||||| || ||||| |||||| | ||||||
Sbjct 23857 TTACCAGTACCGGGCGGGCCGGAGAGAATCGCTCCACGAGGGATCTTCGCACCA 23804
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618430747266560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |