Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq20 293 3e-74 seq367 91.5 2e-13 >seq20 Length=105358 Score = 293 bits (324), Expect = 3e-74 Identities = 703/1050 (67%), Gaps = 29/1050 (3%) Strand=Plus/Minus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 |||||| ||||||| ||||||||||| |||| || ||||| || |||| || | Sbjct 13390 CCCACAACACATGTTGATGCGCGTGGCTGTCGGCATCCATGGAGAGAACATCGAGAAGGC 13331 Query 104281 CTTGGAGACATACGACAAGATGTCCCAAG-GTATGTTCATTCACGCAACACCAACCCTCT 104339 | ||||| |||||| | ||||| ||| ||| |||| ||||| | || ||||||| Sbjct 13330 GATTGAGACTTACGACTACATGTCGCAAAAGTAC-TTCACACACGCTTCGCCTACCCTCT 13272 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 ||||||| || ||||||| || |||||||| |||||||| |||| || ||||||| Sbjct 13271 TCAATGCGGGCACACCAAATCCTCAAATGTCGTCCTGCTTCCTCATCGACATGAAGGAGG 13212 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 || || | || ||||| | || || | | ||||| ||||| ||| |||| Sbjct 13211 ACAGCATTGATGGCATCTACGACACACTCAAGACTTGTGCCTTGATCTCCAAGACCGCTG 13152 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519 | |||||||| | || | || | | | |||| | ||| || | || || | Sbjct 13151 GCGGTATTGGTCTCAACGTTCACCGTATCCGTGCCACTGGCTCTTACATCGGTGGCACCA 13092 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 ||||| ||| | ||| | ||||| |||||||| || | ||| ||| || || |||| Sbjct 13091 ATGGTACATCGAACGGTCTCATTCCCATGCTTCGTGTCTACAACAACACGGCTCGTTATG 13032 Query 104580 TAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCCATGGCAC 104635 | |||||| | ||| | | | || | |||| |||| || ||||||||||| Sbjct 13031 TTGATCAAGGT-GGCAACAAGCGCCCTGGCGCCTTCGCCATCTACCTGGAGCCATGGCAT 12973 Query 104636 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC 104695 || ||| || | | |||||||| | || ||||| || | ||||| | || | Sbjct 12972 GCTGATGTCTTCGGTTTCCTTGATCTTCGCAAGAACCATGGCAAAGAGGAAGTTCGTGCC 12913 Query 104696 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 104755 || || ||||||| ||| || ||||||||||| || ||||||||| | ||| |||||| | Sbjct 12912 CGTGACCTCTTCTACGCACTATGGATTCCAGACCTTTTCATGAAGCGCGTTCAGGAGAAT 12853 Query 104756 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTG---GGT 104812 || | ||| | || || || || || | || |||||||| |||| |||| ||| Sbjct 12852 GGTGAGTGGACGCTATTCTGCCCCAACGAAGCCCCTGGTCTTGCCGA---CGTGTATGGT 12796 Query 104813 GAGGAGTTTGAAGCCCTTTACACAAAG-TACGA--GGAAGAA----GGTCGGGCGACTGC 104865 || ||||| || | || ||| || | ||||| | | || ||||||| ||||| Sbjct 12795 GATGAGTTCGAGGAGCTCTAC-CATCGTTACGAACGTGACAACCGTGGTCGGGAGACTG- 12738 Query 104866 GACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 104925 || ||| || | ||| | || || || || |||| || |||||||||| Sbjct 12737 TTCGCGCCCAAAAGC-----TCTGGTATGCCATCCTTGAGGCTCAGACGGAGACTGGTAA 12683 Query 104926 ACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGT 104985 || | |||||| |||||||| || || |||| ||||| || ||||||||| | ||| Sbjct 12682 CCCTTTCATGCTCTACAAAGATGCTTGCAACCGGAAGAGCAACCAAAAGAATCTTGGTAC 12623 Query 104986 GATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGC 105045 || || || || ||||| || || ||| | || | || | |||||| || Sbjct 12622 CATTCGCAGCTCTAACCTCTGCACCGAGATCGTCGAGTACACTGCTCCTGATGAGGTAGC 12563 Query 105046 TGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACA-T 105104 || ||||||||||| || |||| |||||| || ||||| | | | | | | | Sbjct 12562 GGTATGTAACCTCGCCTCGCTCGCGCTCCCCTCGTTCGTGGA-CTATAAGCGCGGGGAGT 12504 Query 105105 TTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTA 105164 |||| | | |||||||||||||| || || ||| ||| ||| | |||| | | Sbjct 12503 TTGACTTCAACAAACTCCACGAAGTCACCCAAGTTGTTACCCGCAACTTGAACAAGATCA 12444 Query 105165 TTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAA 105224 | || || ||||| || ||| || ||| ||| | | ||| | || | Sbjct 12443 TCGAAGTCAACCACTACCCAGTAGAGGAAGCACGTCGCAGCAATTTCCGTCACAGACCTA 12384 Query 105225 TTGGTCTCGGTGTTCAGGGTCTCGCGGATG 105254 | || |||||||||||||||||||| |||| Sbjct 12383 TCGGGCTCGGTGTTCAGGGTCTCGCTGATG 12354 >seq367 Length=109793 Score = 91.5 bits (100), Expect = 2e-13 Identities = 166/236 (70%), Gaps = 8/236 (3%) Strand=Plus/Minus Query 9697 TCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGT-TGAT-TTTCGCGAGCGACT 9754 ||| | ||| ||||| || |||||||||| |||||| ||| || | ||||||| | Sbjct 24035 TCCGATGGCGTCAATTTCGTCAATGAAGATGATGCAGGGTGTGCTCTTTCGCG--CATTG 23978 Query 9755 TCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG-- 9812 | || || || || |||||| ||| || ||||| ||||||||||| || || | | Sbjct 23977 GCGAACAGGTCACGCACACGCGAGGCACCGACACCGACAAACATCTCTACGAATTCAGAA 23918 Query 9813 CGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9872 | | | ||| | || ||| || || ||| || || ||| ||||| |||||| || | Sbjct 23917 CCACTG-ACACT-GAAGAATGGCACGCCAGACTCGCCGGCAGTGGCTTTGGCGAGGAGCG 23860 Query 9873 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA 9928 ||||||| ||||| ||| || | ||| | || || || || ||||| || ||| Sbjct 23859 TCTTACCAGTACCGGGCGGGCCGGAGAGAATCGCTCCACGAGGGATCTTCGCACCA 23804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583256600522240