Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq257 152 2e-31 seq254 131 5e-25 seq354 95.1 4e-14 >seq257 Length=526535 Score = 152 bits (168), Expect = 2e-31 Identities = 457/703 (65%), Gaps = 3/703 (0%) Strand=Plus/Plus Query 349197 CCGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATC 349256 |||| || || |||||| | ||||| || || || || || | | | | | |||| | Sbjct 132889 CCGCGATCGGTATCGATCTGGGTACCACGTACTCGTGCGTGGGTATCTTCAGAGATGACC 132948 Query 349257 GTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTA 349316 | | ||||| ||||| || || || |||||| | ||||| || || | ||| || || | Sbjct 132949 GCATCGAAATCATTGCCAACGACCAGGGTAACCGCACAACACCTTCGTTCGTCGCTTTCA 133008 Query 349317 CCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAA 349376 | || || ||||| | || |||||||| || || || || | || || || | | Sbjct 133009 CAGATACCGAGCGCCTCATCGGTGATTCGGCGAAGAACCAGGTCGCCATGAACCCCACCA 133068 Query 349377 ATACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAAT 349436 | || || || || || ||||| || || || | | || | ||| || Sbjct 133069 ACACCGTCTTCGACGCAAAGCGCCTCATCGGCCGCAAGTTCGCCGACGCTGAGGTGCAGG 133128 Query 349437 CTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTG 349496 | || | || || || || || | || | | | ||| || | || || | || Sbjct 133129 CCGACATGAAGCACTTCCCCTTCAAGGTCAT-CGACAAG--GGCGGCAAGCCTGTCATCC 133185 Query 349497 AGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTT 349556 |||| || | || || || | || ||| ||| || || || ||||| ||||| | Sbjct 133186 AGGTCGAGTTCAAGGGCGAGGACAAGACATTCACACCTGAGGAGATCTCATCCATGGTCT 133245 Query 349557 TAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTA 349616 | || |||| ||||| ||| || |||| | || | || || | | ||||| Sbjct 133246 TGACCAAGATGAGGGAAACTGCCGAGTCATACCTCGGAGGCACCGTCAACAACGCTGTCG 133305 Query 349617 TTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCA 349676 | || || || ||||| || || || |||||||| || || || |||||||| || Sbjct 133306 TCACCGTCCCCGCCTACTTCAACGACTCCCAGCGTCAAGCTACCAAGGATGCTGGTCTCA 133365 Query 349677 TTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATG 349736 | || || | || || || | || || || || ||||| || || || || || || | Sbjct 133366 TCGCTGGTCTCAACGTCCTCCGTATCATCAACGAGCCCACCGCCGCTGCCATCGCCTACG 133425 Query 349737 GGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTA 349796 | ||||| || | || || || || | || || || || || |||||||||| Sbjct 133426 GTCTTGACAAGAAGACTGTTGGCGAGCGCAACGTCCTCATCTTCGACTTGGGTGGTGGTA 133485 Query 349797 CTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTG 349856 | || ||||| || || || || |||| ||||| || || || || || | ||||| | Sbjct 133486 CCTTCGATGTCTCCCTCCTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCGACTGCCG 133545 Query 349857 GTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGT 349899 | ||||| || | ||||| |||||||| ||||| |||||||| Sbjct 133546 GAGATACTCACTTGGGTGGTGAAGATTTCGATAACCGTCTCGT 133588 >seq254 Length=118772 Score = 131 bits (144), Expect = 5e-25 Identities = 170/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || | || ||||| ||||| || || || || | Sbjct 32546 TTTGCATACCACCACGCAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGT 32605 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || || ||||| || || || |||||||| || || || ||||||| Sbjct 32606 AGTCTGAGAGAGTACGGCCGTCTTCGAGCTGCTTGCCAGCAAAAATGAGTCGCTGCTGAT 32665 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| || || || |||||||| || | || || || ||||||| || || | Sbjct 32666 CCGGGGGAATACCCTCCTTGTCCTGAATCTTCGACTTCACGTTGTCAATCGTGTCTGAAG 32725 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | ||| | ||||| || || ||||| || || || |||||||| Sbjct 32726 ACTCAACCTCCAATGTGATAGTCTTGCCAGTGAGTGTCTTGACGAAGATCTGCAT 32780 Score = 116 bits (128), Expect = 1e-20 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| ||||| | | || || ||||| ||||| || || ||||| || || ||||| Sbjct 32778 CATACCTCCACGAAGGCGCAGGACGAGATGTAGAGTGGATTCCTTTTGGATGTTGTAATC 32837 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| || || || || || || || || | || ||||| || || Sbjct 32838 GGAGAGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAAGCGCTGCTGGTCCGG 32897 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || ||||||||||| || | || || || || |||| ||| |||| || Sbjct 32898 AGGGATGCCCTCCTTATCCTGAATCTTTGACTTGACGTTGTCGATCGTATCGGATGACTC 32957 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713 ||| ||||| || | ||||| ||||| Sbjct 32958 AACCTCAAGGGTGATGGTCTTGCCGGT 32984 >seq354 Length=75842 Score = 95.1 bits (104), Expect = 4e-14 Identities = 192/283 (68%), Gaps = 4/283 (1%) Strand=Plus/Minus Query 378168 GTTTCTTACAGTCATATCATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCG 378227 ||||| ||| || ||| ||| | ||||| | |||||| | ||| || | || || || Sbjct 38005 GTTTCGTACTGTACCATCGTATTTGACCATGACATCTTCAAGTGCCTTGACGAGACGACG 37946 Query 378228 AGAAATATAACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACC 378287 |||||||||||||| | || || ||||| |||||||| | ||| | |||||| | Sbjct 37945 TTGAATATAACCAGTTTCAGCGGTCTTGACTGCTGTATCAATGAGACCCTCGCGACCAGC 37886 Query 378288 CATTGCATGGAAGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAA 378347 ||| || || ||||| || || | || || || || | | | | || |||||| ||| Sbjct 37885 CATGGCGTGAAAGAAGAACTCTGACGGGGTCAGACCTCGCAAATAGGAGTTCTCAACAAA 37826 Query 378348 TCCTCTTGCGCCT--GGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCA 378405 |||| ||| || || || | ||| | || || |||| || || | || | || Sbjct 37825 GCCTC--GCGACTCGGGAGAGTAATCGTCCTTGGTGAAATGTGGCAAAGAGCGGTACTTG 37768 Query 378406 AACCCATATGGAATTCGTTTTCCATCAACATTCTGTTGACCAA 378448 || || | ||||| || | || || ||| |||||| |||| Sbjct 37767 AAGCCGAAGGGAATACGCTGACCTTCGACAGCCTGTTGGCCAA 37725 Score = 84.2 bits (92), Expect = 7e-11 Identities = 94/125 (75%), Gaps = 3/125 (2%) Strand=Plus/Minus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || ||||||||| |||| || ||| ||||| | ||||| || || ||||| || || Sbjct 38736 CGGGGCACACCAAGTGTGACGTTC---TTAGAAGACACACCGGCGAAATGGAAGGTGTTT 38680 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | || |||| ||||| || || ||||| || |||| ||| ||||||||||| Sbjct 38679 AGCGTCATCTGGGTAGCTGGCTCGCCGATGGACTGAGCAGCAAGAACACCAACCATTTCA 38620 Query 377578 CCAGG 377582 ||||| Sbjct 38619 CCAGG 38615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515243217422528