Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq20 178 1e-39 >seq20 Length=105358 Score = 178 bits (196), Expect = 1e-39 Identities = 465/701 (66%), Gaps = 10/701 (1%) Strand=Plus/Minus Query 53242 TGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAA 53301 |||||| ||||||| ||| ||||||||||| || ||||| |||| ||||| ||||| Sbjct 13327 TGAGACTTACGACTACATGTCGCAAAAGTACTTCACACACGCTTCGCCTACCCTCTTCAA 13268 Query 53302 CGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361 || || || | ||||| |||||| ||||||||| | | |||||||| ||| Sbjct 13267 TGCGGGCACACCAAATCCTCAAATGTCGTCCTGCTTCCTCATCGACATGAAGGAGGACAG 13208 Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGG 53421 || || ||||||||||| || |||||| |||||| ||||||||| | || || Sbjct 13207 CATTGATGGCATCTACGACACACTCAAGACTTGTGCCTTGATCTCCAAGACCGCTGGCGG 13148 Query 53422 TATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAAC 53479 ||| ||| || || | || | || ||||||| | ||| | ||| || || || Sbjct 13147 TATTGGTCTCAAC-GTTC-ACCGTATCCGTGCCACTGGCTCTTACATCGGTGGCACCAAT 13090 Query 53480 GG--CGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACG 53537 || | ||| | || || | || ||||| || |||| |||||||||||| || || | Sbjct 13089 GGTACATCG--AACGGTCTCATTCCCATGCTTCGTGTCTACAACAACACGGCTCGTTATG 13032 Query 53538 TCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACG 53597 | | || ||||| |||||| || | |||||||||||||| ||||| ||||| | Sbjct 13031 TTGATCAAGGTGGCAACAAGCGCCCTGGCGCCTTCGCCATCTACCTGGAGCCATGGCATG 12972 Query 53598 CCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCC 53657 | || | | | || || || || || ||| || || | || || | || || Sbjct 12971 CTGATGTCTTCGGTTTCCTTGATCTTCGCAAGAACCATGGCAAAGAGGAAGTTCGTGCCC 12912 Query 53658 GTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGAC 53716 ||||||| || ||| || || |||||||| ||||| |||||| | || || || | Sbjct 12911 GTGACCTCTTCTAC-GCACTATGGATTCCAGACCTTTTCATGAAGCGCGTTCAGGAGAAT 12853 Query 53717 GAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAG 53776 | |||||| || | ||||| ||||| ||| || || | || || ||||| Sbjct 12852 GGTGAGTGGACGCTATTCTGCCCCAACGAAGCCCCTGGTCTTGCCGACGTGTATGGTGAT 12793 Query 53777 GAGTTTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAG 53836 ||||| | ||| | || | |||| | | | ||| | ||| || Sbjct 12792 GAGTTCGAGGAGCTCTACCATCGTTACGAACGTGACAACCGTGGTCGGGAGACTGTTCGC 12733 Query 53837 GCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATG 53896 || | || | ||| |||| ||||| || ||| |||||| || | || | |||| Sbjct 12732 GCCCAAAAGCTCTGGTATGCCATCCTTGAGGCTCAGACGGAGACTGGTAACCCTTTCATG 12673 Query 53897 TGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAA 53937 |||||| ||| | |||| |||||||||||| ||||| Sbjct 12672 CTCTACAAAGATGCTTGCAACCGGAAGAGCAACCAAAAGAA 12632 Score = 100 bits (110), Expect = 3e-16 Identities = 130/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 55744 GACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTA 55803 ||| ||||||||||| | ||| | | || | ||| ||| || |||||||||| Sbjct 11842 GACAGTGTGGGAGATCTCGCAGCGCACCATCATCCAGATGGCTGCCGACCGTGGTGCGTT 11783 Query 55804 CATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAG 55863 |||||||||||| ||||| ||||||| |||| || | || | ||| |||| | | Sbjct 11782 CATCGACCAGTCTCAGTCCTTGAACATTCACATGAAGGAGCCGACCATGGGCAAGATCAC 11723 Query 55864 CTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGAC 55923 |||||||| ||| ||| |||||| || || ||||| || ||||||||||| || || Sbjct 11722 TTCGATGCATTTTGCCGGCTGGAAGCTTGGGCTGAAGACTGGAATGTACTATCTCCGCAC 11663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547212060044800