Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq254 176 5e-39 seq20 132 5e-26 seq241 123 3e-23 seq275 104 3e-17 seq256 86.0 7e-12 seq230 84.2 2e-11 >seq254 Length=118772 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || ||||||||||| || | ||||||||||| Sbjct 32780 ATGCAGATCTTCGTCAAGACACTCACTGGCAAGACTATCACATTGGAGGTTGAGTCTTCA 32721 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || ||||| | || ||||||||||||||||| ||||| || || ||| Sbjct 32720 GACACGATTGACAACGTGAAGTCGAAGATTCAGGACAAGGAGGGTATTCCCCCGGATCAG 32661 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || ||||||||||| ||||| ||||| || | ||||| || ||||||| || Sbjct 32660 CAGCGACTCATTTTTGCTGGCAAGCAGCTCGAAGACGGCCGTACTCTCTCAGACTACAAC 32601 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| || | || | ||||| || ||||| Sbjct 32600 ATCCAGAAGGAGTCCACTCTCCACTTGGTGCTCCGTCTGCGTGGTGG 32554 Score = 172 bits (190), Expect = 6e-38 Identities = 160/203 (79%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| || || ||||||||||||||| |||| || | || | ||| | Sbjct 32984 ACCGGCAAGACCATCACCCTTGAGGTTGAGTCATCCGATACGATCGACAACGTCAAGTCA 32925 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || |||||||| |||||||| || ||||| ||||||||||| | ||||| || || ||| Sbjct 32924 AAGATTCAGGATAAGGAGGGCATCCCTCCGGACCAGCAGCGCTTGATTTTCGCCGGCAAG 32865 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || |||||||||| |||||||| | || || || ||||||||||||||||||| ||| Sbjct 32864 CAGCTCGAGGATGGCCGTACCCTCTCCGATTACAACATCCAAAAGGAATCCACTCTACAT 32805 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| |||| ||||| || || Sbjct 32804 CTCGTCCTGCGCCTTCGTGGAGG 32782 Score = 143 bits (158), Expect = 3e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| ||||| ||||||||||| || | || || || || | Sbjct 32552 ATGCAAATCTTTGTCAAGACTCTTACTGGCAAGACTATCACATTGGAAGTCGAATCGAGC 32493 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || |||| | || || || ||||||||||| || || || |||||| Sbjct 32492 GATACCATCGACAACGTGAAATCGAAGATCCAAGACAAGGAGGGTATCCCGCCTGACCAG 32433 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||||| || || ||||||||||| | || || | || || || ||| ||||| || Sbjct 32432 CAGCGTCTCATCTTCGCTGGTAAGCAGTTGGAAGACGGCCGAACGCTCAGC-GACTACAA 32374 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | | || ||||| || || || || | || | || || || |||||||| Sbjct 32373 TATTCAGAAGGAGTCGACACTGCACTTGGTGCTCCGCCTGCGTGGTGGACA 32323 Score = 141 bits (156), Expect = 1e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| || || |||||||| ||||| || | ||| | ||| | ||| Sbjct 33267 ACCGGCAAGACCATCACCCTTGAGGTGGAGTCGTCCGACACCATCGACAATGTCAAGAGC 33208 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| || ||||| ||||||||||| || || || || || ||| Sbjct 33207 AAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAG 33148 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || || ||||||| ||| ||||| | ||||| || |||| ||||| || || || ||| Sbjct 33147 CAGCTTGAGGATGGTCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCTACACTCCAT 33088 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | || ||||| || || Sbjct 33087 CTCGTCCTCCGCCTTCGTGGAGG 33065 >seq20 Length=105358 Score = 132 bits (146), Expect = 5e-26 Identities = 1114/1770 (63%), Gaps = 87/1770 (5%) Strand=Plus/Plus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || || ||||||||||| || ||||| || || |||||||||| | ||||| ||| Sbjct 11663 GTGCGGAGATAGTACATTCCAGTCTTCAGCCCAAGCTTCCAGCCGGCAAAATGCATCGAA 11722 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 ||| ||| | | || || | || |||| ||||||| ||||||||||| |||| Sbjct 11723 GTGATCTTGCCCATGGTCGGCTCCTTCATGTGAATGTTCAAGGACTGAGACTGGTCGATG 11782 Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGTA 80217 || || ||||| || || ||||| | || || | || | || ||||| ||||| Sbjct 11783 AACGCACCACGGTCGGCAGCCATCTGGATGATGGTGCGCTGCGAGATCTCCCACACTGTC 11842 Query 80218 CGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTG---CCACCG 80271 |||| ||| || ||| || || |||| || | | | || || || Sbjct 11843 TTGTACAGAGTCTT-CG--TCTCTTCAGGGATGTTGGGAATCCTCTGAATGGAACCGCCA 11899 Query 80272 TCCTTTACAATTTGATTTTTCA-ATTCAGACGTCCAGACACCAAGCTTGTGCAGATCTTT 80330 || | || | || |||| ||| | | ||| | || | | |||||||| Sbjct 11900 TCGGCGATGATACGGTTCTTCATGTTCTCA-GACCACAGTCCCATGTCAACGAGATCTTT 11958 Query 80331 CACAAG---GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGA-TACA 80386 || || | | ||| | | || |||||| || || || || || ||| || | Sbjct 11959 CAAGAGCCAGGGGTTGACGA-CTTG--AAACTCGCCGGCCAGCACACGGCG-AGAGTAGA 12014 Query 80387 GGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCG 80446 ||||| ||||| ||||| || |||||| || || || ||||||| ||| || | Sbjct 12015 TGTTTGACGTGTAGGGCTCGAAGCACTCGTTATTCCCAAGAATCTGAGACGTAGATGCGG 12074 Query 80447 TCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCT------TCTTGATATCCT 80500 ||||||| || | ||||| || ||||| || | |||||||| ||||| |||| Sbjct 12075 TCGGCATGGGTGCAACCAAAAGAGAATTGCGAACGCCGTGCTGTGCGATCTTG---TCCT 12131 Query 80501 --CGCG----CAAATCTGACCAAAAATCAACCCCAACGCTGTGAC--CCCACATGTCGTG 80552 ||| | |||| ||| | |||| | |||||| ||||| ||||| Sbjct 12132 TCAGCGAGGCCCAATC---CCAGAGATCA-----GTGGGTGTGACGTTCCACAGGTCGTA 12183 Query 80553 CTGCAAGAT-GCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCT 80611 ||| ||| | ||| | || ||||| || || | ||| |||| |||||| | || Sbjct 12184 CTG-AAGCTGGCCTTGGGAGATAGGAGAACCTTCGTATGTCGCGTAAGGGCCCAGCTCCT 12242 Query 80612 TGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGT 80671 | || | || || || | ||||||||||| || ||| ||| |||| ||| Sbjct 12243 TAGCAATGTCGCAAGATGAGGTGAGGGCCGCGTGGTAGATGGTCTCGAAGATCTGGATGT 12302 Query 80672 TCA-CACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCC 80730 | | | | | |||| || ||||| | ||||| | || ||| | ||||| Sbjct 12303 TGAGCTTCTTG-GCCTCGGGCGACTCGAAGGGCAAGCGTAGTGCCAGGAAGGCATCAGCG 12361 Query 80731 AGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCG---CTTG-TTCGATCGCTCGGCCTC 80786 || |||||||| |||| |||| || | ||| || ||| | ||| || || || Sbjct 12362 AGACCCTGAACACCGAGCCCGATAGGTCTGTGACGGAAATTGCTGCGA-CG---TGCTTC 12417 Query 80787 CGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGT 80846 | | |||||| ||| ||||||| ||||| |||||| |||||||| | || Sbjct 12418 CTCTACTGGGTAGTGGTTGACTTCGATGATCTTGTTCAAGTTGCGGGTAACAACTTGGGT 12477 Query 80847 AACATCATGAAGTTTCTGAAAGTCGAATT------GGTTCCCCTTCACAAATGCCGGAAG 80900 || || || ||||| | ||||| || | | || | ||| || | || || Sbjct 12478 GACTTCGTGGAGTTTGTTGAAGTCAAACTCCCCGCGCTTATAGTCCACGAACGAGGGGAG 12537 Query 80901 GCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTC 80960 || || || || || || || || ||||| |||| | | || |||||||||| || Sbjct 12538 CGCGAGCGAGGCGAGGTTACATACCGCTACCTCATCAGGAGCAGTGTACTCGACGATCTC 12597 Query 80961 CGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCA 81020 ||||| | ||||| ||| ||||| || || || ||||| ||| |||||| Sbjct 12598 GGTGCAGAGGTTAGAGCTGCGAATGGTACCAAGATTCTTTTGGTTGCTCTTCCGGTTGCA 12657 Query 81021 AGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTC 81080 ||| || |||||| |||| | ||| |||| ||||| ||| | || |||||||| | Sbjct 12658 AGCATCTTTGTAGAGCATGAAAGGGTTACCAGTCTCCGTCTGAGCCTCAAGGATGGCATA 12717 Query 81081 CCAAA--TCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGC- 81137 ||| | | | | |||| || || | | || | | | ||| | | | | Sbjct 12718 CCAGAGCTTTTGGGCGC---GAACAGTCTCCCGACCACGGTT---GTCACGTTCGTAACG 12771 Query 81138 ---GTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAG 81193 ||| ||| || ||||||| |||| | | || | || | ||| ||||| | Sbjct 12772 ATGGTAGAGC-TCCTCGAACTCATCACCATACACGTCGGCAAGACCAGGGGCTTCGTTGG 12830 Query 81194 GGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCC 81253 |||| | || ||| || | | || || |||||||||| ||| || |||| Sbjct 12831 GGCAGAATAGCGTCCACTCACCATTCTCCTGAACGCGCTTCATGAAAAGGTCTGGAATCC 12890 Query 81254 AGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACT 81313 | || ||| ||| ||||| ||| || | ||||| | || ||||| ||| | | Sbjct 12891 ATAGTGCGTAGAAGAGGTCACGGGCACGAACTTCCTCTTTGCCATGGTTCTTGCGAAGAT 12950 Query 81314 CGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGC 81373 | || || | | || || ||||||||||||||||| || | ||||| | || || Sbjct 12951 CAAGGAAACCGAAGACATCAGCATGCCATGGCTCCAGGTAGATGGCGAAGGCGCCAGGGC 13010 Query 81374 G---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGA 81430 | |||||| || | || ||||| || || ||| | ||||| | ||| || | Sbjct 13011 GCTTGTTGCCACCTTGATCAACATAACGAGCCGTGTTGTTGTAGACACGAAGCATGGGAA 13070 Query 81431 TGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCG--CACCTT 81488 ||| ||| | || ||| || || || |||| || || |||| || || | Sbjct 13071 TGAGACCGTTCGATGTACCATTGGTGCCACCGATGTAAGAGCCAGTGGCACGGATACGGT 13130 Query 81489 GCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGT 81548 | ||| ||||| || || || | ||| || ||| ||||| || | || Sbjct 13131 GAACGTTG--AGACCAATACCGCCAGCGGTCTTGGAGATCAAGGCACAAGTCTTGAGTGT 13188 Query 81549 CTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTG 81608 || || || || || ||||| || | |||||||| | | ||| ||| ||||| || Sbjct 13189 GTCGTAGATGCCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGACGACATTTG 13248 Query 81609 AGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGA 81668 ||| || || ||| |||||||| || || || | ||||| |||| || | || Sbjct 13249 AGGATTTGGTGTGCCCGCATTGAAGAGGGTAGGCGAAGCGTGTGTGAAGTACTTTTGCGA 13308 Query 81669 CATCAGGTCATAGGTTTC-CTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTA 81727 ||| ||| || || || | | | | | || | || || || || |||| ||| | Sbjct 13309 CATGTAGTCGTAAGTCTCAATCGCCTTCTCG-ATGTTCTCTCCATGGATGCCGACAGCCA 13367 Query 81728 CACGCATAAACATGTACTG-GGGCGTCTCG 81756 | ||||| ||||||| || ||||| |||| Sbjct 13368 CGCGCATCAACATGTGTTGTGGGCG-CTCG 13396 >seq241 Length=242151 Score = 123 bits (136), Expect = 3e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| || || || ||||| ||||| || | ||| | ||| | ||| | Sbjct 46661 ACCGGCAAGACGATCACCCTCGAGGTGGAGTCGTCCGACACCATCGACAATGTCAAGTCC 46720 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| ||||| || ||||||||||| | || || || || ||| Sbjct 46721 AAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCTTGATCTTCGCCGGCAAG 46780 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || |||||||| | || || || | ||||| || |||| ||||| || || || || Sbjct 46781 CAGCTCGAGGACGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCAACGCTCCAC 46840 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 | ||| | ||||| || ||||| Sbjct 46841 TTGGTCCTCCGTCTCCGTGGTGG 46863 >seq275 Length=365033 Score = 104 bits (114), Expect = 3e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 ||||||||||| ||||| || |||||||||||||| || || || || ||||| |||||| Sbjct 273731 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAG 273790 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 |||| || ||||| | ||||| || |||| ||||| || || || || | ||| | Sbjct 273791 GATGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCGACCCTGCACTTGGTCCTC 273850 Query 27619 CGTCTTCGCGGTGGA 27633 ||||| || || ||| Sbjct 273851 CGTCTGCGTGGAGGA 273865 >seq256 Length=102407 Score = 86.0 bits (94), Expect = 7e-12 Identities = 221/331 (67%), Gaps = 12/331 (4%) Strand=Plus/Minus Query 31218 CGACGCCAACTGGGCCGGTACCCACAAGTCG--CACGAGTGCACGCTTATTATTACCGAG 31275 ||| |||||| || |||||| | || || ||| ||||| || ||| | |||||| Sbjct 86153 CGATGCCAACAAAGCTGGTACCAA--AGACGGCCACCTCTGCACACTCATTCTCACCGAG 86096 Query 31276 GGTGACTCGGCAAAGGCGCTTGCTATTGCTGG-CTTGAGTGTTGTGGGGCGCAATGCGTT 31334 || || ||||| | | ||||| ||||||| | || ||| || | || || Sbjct 86095 GGAGAGTCGGCCAGTGTCCTTGCGCTTGCTGGACGTGC-TGTCGTCAATCAGGATCTCTT 86037 Query 31335 CGGGGTGTTTCCGCTCCGAGGCAAGCCGCGTAACGTTCGTGACGCCTCCGTTAAACAGGT 31394 ||| || ||||||||||| || || | || |||||||| ||||| | ||| | ||| | Sbjct 86036 CGGTGTCTTTCCGCTCCGTGGTAAACTGCTCAACGTTCGAGACGCTACTGTTGATCAGAT 85977 Query 31395 TACGGATAATGAAGAGTTTTCCAACCTGAAAAAGATCCTCGGGCTTCAGCATGGCAAGGT 31454 | | | ||| | || | ||| | || ||| || | || |||||||| |||| Sbjct 85976 CATGAAGAATCAGGAAATCCAAAACATCAAGAAGTTCATGGGTCTTCAGCACAAGAAGGA 85917 Query 31455 ATATAAT-----TCAC-TGAGAGAATTGCGGTACGGTCGCCTCATGATTATGACCGACGC 31508 || ||| | || ||| | | | || || |||| |||||||| ||||| || Sbjct 85916 GTACAATATGGCTGACATGAAGGGACTCCGTTATGGTCATCTCATGATCATGACGGATCA 85857 Query 31509 AGATCTCGACGGCAGTCACATCAAGGGTCTT 31539 ||||| ||| || || || |||||||| ||| Sbjct 85856 AGATCACGATGGTAGCCATATCAAGGGACTT 85826 >seq230 Length=87271 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 64717 CGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATT 64776 ||||| | || || ||| || || || || ||||| || || ||| || || Sbjct 45332 CGTCTGGTCGCATTCGCCGCCGTTGAGGGCATCTTCTTCAGCGGCTCGTTCGCGTCCATC 45391 Query 64777 TTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCT 64836 |||||| | || ||||| ||||||||||| ||||| | || || ||||||||||||||| Sbjct 45392 TTCTGGTTGAAGAAGCGTGGCCTGATGCCCGGTCTCACATTCTCAAACGAGCTGATCTCT 45451 Query 64837 CGGGACGAGGGGCTCCACCAAGAATTTGC 64865 || |||||||| | ||| || ||||| Sbjct 45452 CGCGACGAGGGCATGCACACTGACTTTGC 45480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570306293765120