Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq254 100 2e-16 seq241 84.2 1e-11 >seq254 Length=118772 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||| ||||||||| |||||| || ||||| || ||||| || || || Sbjct 32563 AGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTACGG 32622 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| || || || || ||||| || | ||||| || ||||| || | |||||| Sbjct 32623 CCGTCTTCGAGCTGCTTGCCAGCAAAAATGAGTCGCTGCTGATCCGGGGGAATACCCTCC 32682 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| || | || ||| | ||| |||||| ||| || |||| || Sbjct 32683 TTGTC-CTGAATCTTCGACTTCACGTTGTCAATCGTGTCTGAAGACTCAACCTCCAATGT 32741 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || || || || |||||||| Sbjct 32742 GATAGTCTTGCCAGTGAGTGTCTTGACGAAGATCTGCAT 32780 Score = 86.0 bits (94), Expect = 4e-12 Identities = 154/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || || | |||||| || || || |||||| ||||| || || || || ||||| Sbjct 32335 AGGCGGAGCACCAAGTGCAGTGTCGACTCCTTCTGAATATTGTAGTCGCTGAGCGTTCGG 32394 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| | || ||||| || || || | |||||| ||||| ||||| | |||||| Sbjct 32395 CCGTCTTCCAACTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGCGGGATACCCTCC 32454 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGG 34666 |||||| |||| || | ||| ||| | || || || ||| | || ||||||| | Sbjct 32455 TTGTCTTGGATC-TTCGATTTCACGTTGTCGATGGTATCGCTCGAT-TCGACTTCCAATG 32512 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || || || || | || || ||||| || ||||| Sbjct 32513 TGATAGTCTTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 32552 >seq241 Length=242151 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| ||||| || |||||| || ||||| || || || || || || Sbjct 46854 AGACGGAGGACCAAGTGGAGCGTTGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGG 46795 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || ||||| || || || ||||| |||||||| || | |||||| Sbjct 46794 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCC 46735 Query 34609 TTGTCTGTGATCTT 34622 ||||| |||||| Sbjct 46734 TTGTCCTGGATCTT 46721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314727390598208