Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq254 111 1e-19 seq275 82.4 7e-11 >seq254 Length=118772 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||||| || |||||| |||| || | ||||| ||| || | Sbjct 32552 ATGCAAATCTTTGTCAAGACTCTTACTGGCAAGACTATCACATTGGAAGTCGAATCGAGC 32493 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || ||| || || |||||||| || || || || || || || Sbjct 32492 GATACCATCGACAACGTGAAATCGAAGATCCAAGACAAGGAGGGTATCCCGCCTGACCAG 32433 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTC-CGATTACAA 27166 |||||| | || | ||| || || || ||||||||| | ||| || | ||| ||||| Sbjct 32432 CAGCGTCTCATCTTCGCTGGTAAGCAGTTGGAAGACGGC-CGAACGCTCAGCGACTACAA 32374 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| ||||||||||| | || ||||| | || |||| ||||| Sbjct 32373 TATTCAGAAGGAGTCGACACTGCACTTGGTGCTCCGCCTGCGTGGTGG 32326 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071 ||||||||| | || || ||||| || || | ||||| |||| || | ||||| | Sbjct 32984 ACCGGCAAGACCATCACCCTTGAGGTTGAGTCATCCGATACGATCGACAACGTCAAGTCA 32925 Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || ||||| || || || ||||| || || || || ||||| || || | ||||||||| Sbjct 32924 AAGATTCAGGATAAGGAGGGCATCCCTCCGGACCAGCAGCGCTTGATTTTCGCCGGCAAG 32865 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 || | || || | ||| | |||||||||||||| |||||||| || || ||||| Sbjct 32864 CAGCTCGAGGATGGCCGTACCCTCTCCGATTACAACATCCAAAAGGAATCCACTCTACAT 32805 Query 27192 TTGGTTTTGCG 27202 | || |||| Sbjct 32804 CTCGTCCTGCG 32794 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 27010 TGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAAC 27069 ||||||||||| | || || ||||| ||||| |||||||| | || || | ||||| Sbjct 33269 TGACCGGCAAGACCATCACCCTTGAGGTGGAGTCGTCCGACACCATCGACAATGTCAAGA 33210 Query 27070 AAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCA 27129 || || || ||||| || || || || || || || ||||| | || | |||||||| Sbjct 33209 GCAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAGCAGCGCCTGATCTTCGCCGGCA 33150 Query 27130 AACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTAC 27189 | || | || || || ||| | ||||| |||||||| || |||||||| || | | Sbjct 33149 AGCAGCTTGAGGATGGTCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCTACACTCC 33090 Query 27190 ATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || | || | || | || || ||||| Sbjct 33089 ATCTCGTCCTCCGCCTTCGTGGAGGCAT 33062 >seq275 Length=365033 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 27080 AGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGA 27139 |||||| || ||||| || || || || |||||| | || | ||||||||| || | || Sbjct 273730 AGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGA 273789 Query 27140 AGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199 || | ||| | ||||| |||||||| || |||||||||||| | || ||||| | Sbjct 273790 GGATGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCGACCCTGCACTTGGTCCT 273849 Query 27200 GCGTTTGCGGGGTGG 27214 ||| |||| || || Sbjct 273850 CCGTCTGCGTGGAGG 273864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434915268587520