Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq254 150 4e-31 seq241 140 8e-28 seq275 95.1 3e-14 seq152 91.5 3e-13 >seq254 Length=118772 Score = 150 bits (166), Expect = 4e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | ||||| || || |||||||| || ||||||||||| ||||| | || Sbjct 32784 TCCACGAAGGCGCAGGACGAGATGTAGAGTGGATTCCTTTTGGATGTTGTAATCGGAGAG 32843 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | ||||| || ||||||||||| ||||| || | ||| || ||||| ||||| | Sbjct 32844 GGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAAGCGCTGCTGGTCCGGAGGGAT 32903 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || ||||| ||||| |||||| || ||||| ||||| || || || |||||||| Sbjct 32904 GCCCTCCTTATCCTGAATCTTTGACTTGACGTTGTCGATCGTATCGGATGACTCAACCTC 32963 Query 211070 GAGAGTGATCGTCTTTCCCGTGA 211092 || ||||| ||||| || |||| Sbjct 32964 AAGGGTGATGGTCTTGCCGGTGA 32986 Score = 147 bits (162), Expect = 5e-30 Identities = 153/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | ||||| || || || || ||||| || |||||||| || || | || Sbjct 33067 TCCACGAAGGCGGAGGACGAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGGAGAG 33126 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | ||||| || ||||||||||| |||||||| ||||| || ||||| ||||| | Sbjct 33127 GGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGAGGGAT 33186 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || ||||||||||||||||| || || || ||||||||||| || || ||||| Sbjct 33187 ACCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATGGTGTCGGACGACTCCACCTC 33246 Query 211070 GAGAGTGATCGTCTTTCCCGT 211090 || ||||| ||||| || || Sbjct 33247 AAGGGTGATGGTCTTGCCGGT 33267 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| ||||||||||| || |||||||| || || | || || | || ||| Sbjct 32569 AGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTACGGCCGTCT 32628 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || || || || || || || || || |||| || ||||||||| Sbjct 32629 TCGAGCTGCTTGCCAGCAAAAATGAGTCGCTGCTGATCCGGGGGAATACCCTCCTTGTCC 32688 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| |||||||| || || ||||| || |||||||| | ||||| ||| Sbjct 32689 TGAATCTTCGACTTCACGTTGTCAATCGTGTCTGAAGACTCAACCTCCAATGTGATAGTC 32748 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 32749 TTGCCAGTGAGTGTCTTGACGAAGATCTGCAT 32780 >seq241 Length=242151 Score = 140 bits (154), Expect = 8e-28 Identities = 145/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| || || ||||| || |||||||| || || | || || | || || Sbjct 46848 AGGACCAAGTGGAGCGTTGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCGTCC 46789 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| | ||| || ||||| || |||| || ||||||||| Sbjct 46788 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 46729 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| || || |||||||| ||||||||| Sbjct 46728 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATCGTC 46669 Query 211083 TTTCCCGTGA 211092 || || |||| Sbjct 46668 TTGCCGGTGA 46659 >seq275 Length=365033 Score = 95.1 bits (104), Expect = 3e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | ||||| | ||| || || ||||| || |||||||| || || | || Sbjct 273862 TCCACGCAGACGGAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAG 273803 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | ||||| || ||||||||||| |||||||| || || || ||||| || |||| Sbjct 273802 GGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAAT 273743 Query 211010 TCCTTCCTTGTC 211021 || |||||||| Sbjct 273742 GCCCTCCTTGTC 273731 >seq152 Length=430431 Score = 91.5 bits (100), Expect = 3e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 210948 AGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGA 211007 || |||| |||||||||||||||||||| | ||| |||||| ||||| ||||||||| Sbjct 137200 AGCGTCCGGCCATCTTCCAGCTGCTTGCCCGACCAGACAAGGCGCTGTTGATCAGGAGGA 137141 Query 211008 ACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACC 211067 | |||||||| |||||||| | | ||| | | | |||| ||||| ||| | | Sbjct 137140 ATACCTTCCTTCTCCTGGATTCTGTATTTGATGATCGCGATTGTGTCGCTGCTCGAAGCG 137081 Query 211068 TCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102 | | |||| ||| || ||||||||||| || Sbjct 137080 TTAATGTTGATGTCCTTGCCTGTGAGAGTCTTAAC 137046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159143445458240