Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq254 136 9e-27 seq241 132 1e-25 seq486 102 2e-16 >seq254 Length=118772 Score = 136 bits (150), Expect = 9e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| || ||||| || || || || |||| ||||| |||| | || Sbjct 33070 ACGAAGGCGGAGGACGAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGT 33129 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| || |||||||| || || || ||||| || || ||||| Sbjct 33130 GCGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGAGGGATACC 33189 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| ||| ||||||||||| || | ||||| || | Sbjct 33190 CTCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAG 33249 Query 225672 CGTGATCGTCTTGCCCGTCA 225691 ||||| |||||||| |||| Sbjct 33250 GGTGATGGTCTTGCCGGTCA 33269 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||||||||| || || |||| ||||| || | | ||| | || ||| Sbjct 32569 AGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTACGGCCGTCT 32628 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| || || ||||| || || || || |||||||| |||||||| Sbjct 32629 TCGAGCTGCTTGCCAGCAAAAATGAGTCGCTGCTGATCCGGGGGAATACCCTCCTTGTCC 32688 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| |||||| || || |||||||| | || || || || ||||| ||| Sbjct 32689 TGAATCTTCGACTTCACGTTGTCAATCGTGTCTGAAGACTCAACCTCCAATGTGATAGTC 32748 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | || || | ||| | ||||| Sbjct 32749 TTGCCAGTGAGTGTCTTGACGAAGATCTGCAT 32780 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || || || || || || | |||||| ||| | |||| || ||| Sbjct 32341 AGCACCAAGTGCAGTGTCGACTCCTTCTGAATATTGTAGTCGCTGAGCGTTCGGCCGTCT 32400 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | |||||| ||||||||||| || || || ||||| ||||| ||||| ||||||||| Sbjct 32401 TCCAACTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGCGGGATACCCTCCTTGTCT 32460 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||| |||||||| || | ||| || || || ||||| ||| Sbjct 32461 TGGATCTTCGATTTCACGTTGTCGATGGTATCGCTCGATTCGACTTCCAATGTGATAGTC 32520 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | ||| || | || | |||||| Sbjct 32521 TTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 32552 Score = 118 bits (130), Expect = 3e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | |||||| || || ||||||||||| ||||||| |||||||||| | || Sbjct 32787 ACGAAGGCGCAGGACGAGATGTAGAGTGGATTCCTTTTGGATGTTGTAATCGGAGAGGGT 32846 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| || ||||| || | || || ||||| || || || || Sbjct 32847 ACGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAAGCGCTGCTGGTCCGGAGGGATGCC 32906 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| || || |||||| ||| || ||||| || || || | || || || | Sbjct 32907 CTCCTTATCCTGAATCTTTGACTTGACGTTGTCGATCGTATCGGATGACTCAACCTCAAG 32966 Query 225672 CGTGATCGTCTTGCCCGT 225689 ||||| |||||||| || Sbjct 32967 GGTGATGGTCTTGCCGGT 32984 >seq241 Length=242151 Score = 132 bits (146), Expect = 1e-25 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | |||||| || || || || |||| ||||| |||| || ||| | || || Sbjct 46848 AGGACCAAGTGGAGCGTTGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCGTCC 46789 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| | || || ||||| || ||||| || |||||||| Sbjct 46788 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 46729 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| ||||||||||| || | ||||| || | ||||||||| Sbjct 46728 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATCGTC 46669 Query 225682 TTGCCCGT 225689 ||||| || Sbjct 46668 TTGCCGGT 46661 >seq486 Length=3624 Score = 102 bits (112), Expect = 2e-16 Identities = 174/249 (70%), Gaps = 5/249 (2%) Strand=Plus/Minus Query 7465 TTTTCTGGTATTATAGGTACTATATTTTCTATGATTATAAGGTTAGAATTAGCTGCTCCG 7524 ||||| ||| | ||||||||| |||||| | | || || ||||| | | | || Sbjct 3081 TTTTCAGGTTTAATAGGTACTGCCTTTTCTGTATTGATTAGATTAGAGCTGTCAGGACCT 3022 Query 7525 GGTTCTCAA-ATATTGAGTGGTAATAGCCAACTTTACAACGTTATTATTACGGCGCATGC 7583 ||| ||| |||||| || ||| ||| | || ||| ||||||||| || ||||| Sbjct 3021 GGTGTTCAGTATATTGC-TGACAAT---CAATTATATAACAGTATTATTACTGCTCATGC 2966 Query 7584 CTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATT 7643 || | |||||||||||| | || ||||| | | | ||||| || || || || | || Sbjct 2965 TATTATAATGATTTTCTTTATGGTAATGCCAGCTTTAATAGGTGGGTTTGGTAACTTTTT 2906 Query 7644 CGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTT 7703 |||| ||| | || | |||||||||| || || || ||||| |||||||||| Sbjct 2905 ACTTCCATTAGGTTTAGGAGGACCTGATATGGGATTCCCTAGACTTAATAATATAAGTTA 2846 Query 7704 TTGATTACT 7712 || |||||| Sbjct 2845 TTTATTACT 2837 Score = 95.1 bits (104), Expect = 3e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 371370 TAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAGTTTAT 371429 ||||||||| | || ||||| ||||||||||||| | || || |||||||| || Sbjct 2608 TAATTTATGTAATCTTATTCCAGGACTTCTCATATTAAATGTAGTTGTCATAAAGTTCAT 2667 Query 371430 AGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCGAC 371486 || || |||||| ||||||||| | ||||||||| | |||||| |||||||| || Sbjct 2668 GGCTCCAAGAAGACTAGATATACCAGAAAGATGTAATCCAAATATAGCTAAATCAAC 2724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192522399119744