Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq20 161 1e-34 >seq20 Length=105358 Score = 161 bits (178), Expect = 1e-34 Identities = 383/576 (66%), Gaps = 2/576 (0%) Strand=Plus/Plus Query 77955 CCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATA 78014 |||||| ||| || ||||| | | | ||| ||||||| |||| ||| || ||||| Sbjct 12815 CCAGGGGCTTCGTTGGGGCAGAATAGCGTCCACTCACCATTCTCCTGAACGCGCTTCATG 12874 Query 78015 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCT 78074 || || || || |||||||| || || || || |||| | | ||| || || || Sbjct 12875 AAAAGGTCTGGAATCCATAGTGCGTAGAAGAGGTCACGGGCACGAACTTCCTCTTTGCCA 12934 Query 78075 GTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATT 78134 ||||| |||||| || || | | | ||||| ||||||||| || || || || Sbjct 12935 TGGTTCTTGCGAAGATCAAGGAAACCGAAGACATCAGCATGCCATGGCTCCAGGTAGATG 12994 Query 78135 GCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAA 78194 || | | ||||| || || || || || ||||| | ||| | || ||||| || || Sbjct 12995 GCGAAGGCGCCAGGGCGCTTGTTGCCACCTTGATCAACATAACGAGCCGTGTTGTTGTAG 13054 Query 78195 ACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCA 78254 || | | ||| ||||| | |||||| ||||| ||||| || ||| || ||| ||| Sbjct 13055 ACACGAAGCATGGGAATGAGACCGTTCGATGTACCATTGGTGCCACCGATGTAAGAGCCA 13114 Query 78255 CTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCG 78314 | || || ||| || | | || || || || || |||| || || | || Sbjct 13115 GTGGCACGGATACGGTGAACGTTGAGACCAATACCGCCAGCGGTCTTGGAGATCAAGGCA 13174 Query 78315 CAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAA 78374 ||| || | ||| |||||||| || || || ||||| ||| |||||| | || || Sbjct 13175 CAAGTCTTGAGTGTGTCGTAGATGCCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAG 13234 Query 78375 CAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTA 78434 ||| ||||||||| ||| || || ||||| || | || || || || || || Sbjct 13235 CAGGACGACATTTGAGGATTTGGTGTGCCCGCATTGAAGAGGGTAGGCGAAGCGTGTGTG 13294 Query 78435 AACCATTTTTCAGAAA-GTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATG 78493 || | |||| || | |||| | ||| || ||||| || || |||| | | ||| Sbjct 13295 AAGTACTTTTGCGACATGTAG-TCGTAAGTCTCAATCGCCTTCTCGATGTTCTCTCCATG 13353 Query 78494 AATTCCTACCGCTACACGCATCAACATATGCTGAGG 78529 || || || || || ||||||||||| || || || Sbjct 13354 GATGCCGACAGCCACGCGCATCAACATGTGTTGTGG 13389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694663798384640