Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq20 170 3e-37 >seq20 Length=105358 Score = 170 bits (188), Expect = 3e-37 Identities = 409/614 (67%), Gaps = 6/614 (1%) Strand=Plus/Plus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 || || ||||| || | || || | | |||||| ||| || || || | | | | Sbjct 12785 TCGAACTCATCACCATACACGTCGGCAAGACCAGGGGCTTCGTTGGGGCAGAATAGCGTC 12844 Query 76580 CACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 76639 |||||||||| |||| ||| || ||||| || || || || |||||||| || || Sbjct 12845 CACTCACCATTCTCCTGAACGCGCTTCATGAAAAGGTCTGGAATCCATAGTGCGTAGAAG 12904 Query 76640 AGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATA 76699 || || |||| | | ||| || || || ||||| |||||| ||||| | | Sbjct 12905 AGGTCACGGGCACGAACTTCCTCTTTGCCATGGTTCTTGCGAAGATCAAGGAAACCGAAG 12964 Query 76700 ATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCC 76759 | ||||| ||||||||| || || || || || | | || || || || || || || Sbjct 12965 ACATCAGCATGCCATGGCTCCAGGTAGATGGCGAAGGCGCCAGGGCGCTTGTTGCCACCT 13024 Query 76760 TGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGAT 76819 ||||| | ||| | || ||||| || || || | | ||| ||||| | ||||| ||| Sbjct 13025 TGATCAACATAACGAGCCGTGTTGTTGTAGACACGAAGCATGGGAATGAGACCGTTCGAT 13084 Query 76820 GTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCT 76879 |||||||| || ||| || ||| ||| ||||| ||| || || || Sbjct 13085 GTACCATTGGTGCCACCGATGTAAGAGCCAGTGGCACGGATACGGTGAACGTTGAGACCA 13144 Query 76880 ATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCT 76939 || || || || | || ||||| | ||||| || | |||||| |||||||| || Sbjct 13145 ATACCGCCAGCGGTCTTGGAGATCAAGGCACAAGTCTTGAGTGTGTCGTAGATGCCATCA 13204 Query 76940 ATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCT 76999 || || || ||| |||||| | || || ||| ||||||||| ||| || || Sbjct 13205 ATGCTGTCCTCCTTCATGTCGATGAGGAAGCAGGACGACATTTGAGGATTTGGTGTGCCC 13264 Query 77000 GCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGA-AAGTAGATTGTATGT 77058 ||||| || | ||||| || || || ||||| | |||| || | |||| | ||| || Sbjct 13265 GCATTGAAGAGGGTAGGCGAAGCGTGTGTGAAGTACTTTTGCGACATGTAG-TCGTAAGT 13323 Query 77059 TTCAATAACTGCTTCT--ATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATA 77116 ||||| | ||||| || | | | ||| || || ||||| || ||||||||||| Sbjct 13324 CTCAAT--CGCCTTCTCGATGTTCTCTCCATGGATGCCGACAGCCACGCGCATCAACATG 13381 Query 77117 TGCTGAGGTCGTTC 77130 || || || || || Sbjct 13382 TGTTGTGGGCGCTC 13395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712929266872320